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About: KReator is an integrated development environment (IDE) for relational probabilistic knowledge representation languages. At the moment, KReator supports Bayesian Logic Programs (BLPs), Markov Logic Networks (MLNs), Relational Maximum Entropy (RME), Relational Bayesian Networks (RBN), and Probabilistic Prolog (ProbLog). Changes:
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About: Epistatic miniarray profiles (E-MAPs) are a high-throughput approach capable of quantifying aggravating or alleviating genetic interactions between gene pairs. The datasets resulting from E-MAP experiments typically take the form of a symmetric pairwise matrix of interaction scores. These datasets have a significant number of missing values - up to 35% - that can reduce the effectiveness of some data analysis techniques and prevent the use of others. This project contains nearest neighbor based tools for the imputation and prediction of these missing values. The code is implemented in Python and uses a nearest neighbor based approach. Two variants are used - a simple weighted nearest neighbors, and a local least squares based regression. Changes:Initial Announcement on mloss.org.
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About: OpenGM is a free C++ template library, a command line tool and a set of MATLAB functions for optimization in higher order graphical models. Graphical models of any order and structure can be built either in C++ or in MATLAB, using simple and intuitive commands. These models can be stored in HDF5 files and subjected to state-of-the-art optimization algorithms via the OpenGM command line optimizer. All library functions can also be called directly from C++ code. OpenGM realizes the Inference Algorithm Interface (IAI), a concept that makes it easy for programmers to use their own algorithms and factor classes with OpenGM. Changes:Initial Announcement on mloss.org.
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About: Pyriel is a Python system for learning classification rules from data. Unlike other rule learning systems, it is designed to learn rule lists that maximize the area under the ROC curve (AUC) instead of accuracy. Pyriel is mostly an experimental research tool, but it's robust and fast enough to be used for lightweight industrial data mining. Changes:1.5 Changed CF (confidence factor) to do LaPlace smoothing of estimates. New flag "--score-for-class C" causes scores to be computed relative to a given (positive) class. For two-class problems. Fixed bug in example sampling code (--sample n) Fixed bug keeping old-style example formats (terminated by dot) from working. More code restructuring.
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About: This Java software implements Profile Hidden Markov Models (PHMMs) for protein classification for the WEKA workbench. Standard PHMMs and newly introduced binary PHMMs are used. In addition the software allows propositionalisation of PHMMs. Changes:description changed
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About: A Sortware for All Pairs Similarity Search Changes:Initial Announcement on mloss.org.
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About: KeplerWeka represents the integration of all the functionality of the WEKA Machine Learning Workbench into the open-source scientific workflow Kepler. Among them are classification, [...] Changes:
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About: OpenViBE is an opensource platform that enables to design, test and use Brain-Computer Interfaces (BCI). Broadly speaking, OpenViBE can be used in many real-time Neuroscience applications [...] Changes:New release 0.8.0.
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About: Moses is a statistical machine translation system that allows you to automatically train translation models for any language pair. All you need is a collection of translated texts (parallel corpus). An efficient search algorithm finds quickly the highest probability translation among the exponential number of choices. Changes:Initial Announcement on mloss.org.
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About: jblas is a fast linear algebra library for Java. jblas is based on BLAS and LAPACK, the de-facto industry standard for matrix computations, and uses state-of-the-art implementations like ATLAS for all its computational routines, making jBLAS very fast. Changes:Changes from 1.0:
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About: redsvd is a library for solving several matrix decomposition (SVD, PCA, eigen value decomposition) redsvd can handle very large matrix efficiently, and optimized for a truncated SVD of sparse matrices. For example, redsvd can compute a truncated SVD with top 20 singular values for a 100K x 100K matrix with 10M nonzero entries in about two second. Changes:Initial Announcement on mloss.org.
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About: The gmm toolbox contains code for density estimation using mixtures of Gaussians: Starting from simple kernel density estimation with spherical and diagonal Gaussian kernels over manifold Parzen window until mixtures of penalised full Gaussians with only a few components. The toolbox covers many Gaussian mixture model parametrisations from the recent literature. Most prominently, the package contains code to use the Gaussian Process Latent Variable Model for density estimation. Most of the code is written in Matlab 7.x including some MEX files. Changes:Initial Announcement on mloss.org
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About: A collection of clustering algorithms implemented in Javascript. Changes:Initial Announcement on mloss.org.
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About: A stochastic variant of the mirror descent algorithm employing Langford and Zhang's truncated gradient idea to minimize L1 regularized loss minimization problems for classification and regression. Changes:Fixed major bug in implementation. The components of the iterate where the current example vector is zero were not being updated correctly. Thanks to Jonathan Chang for pointing out the error to us.
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About: Visualizing the performance of scoring classifiers. Changes:Fetched by r-cran-robot on 2013-04-01 00:00:08.344833
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About: Random Survival Forests Changes:Fetched by r-cran-robot on 2013-03-01 00:00:08.083405
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About: The SUMO Toolbox is a Matlab toolbox that automatically builds accurate surrogate models (also known as metamodels or response surface models) of a given data source (e.g., simulation code, data set, script, ...) within the accuracy and time constraints set by the user. The toolbox minimizes the number of data points (which it selects automatically) since they are usually expensive. Changes:Incremental update, fixing some cosmetic issues, coincides with JMLR publication.
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About: PSVM - Support vector classification, regression and feature extraction for non-square dyadic data, non-Mercer kernels. Changes:Initial Announcement on mloss.org.
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About: Implementation of LSTM for biological sequence analysis (classification, regression, motif discovery, remote homology detection). Additionally a LSTM as logistic regression with spectrum kernel is included. Changes:Spectrum LSTM package included
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