mloss | Projects that are tagged with remote homology detection.

pHMM4weka 1.0

by smm52 - October 22, 2010, 03:48:07 CET [ ] 10485 views, 3099 downloads, 0 subscriptions

About: This Java software implements Profile Hidden Markov Models (PHMMs) for protein classification for the WEKA workbench. Standard PHMMs and newly introduced binary PHMMs are used. In addition the software allows propositionalisation of PHMMs.

Changes:

description changed

Authors: Stefan Mutter
License: Gpl Version 3 Or Later
Programming Language: Java

Operating System: Platform Independent
Data Formats: Arff
Tags: Sequence Analysis, Hmm, Support Vector, Resampling, Structured Data, Supervised Learning, Weka, Statistics, Hidden Markov Model, Statistical Classification, Remote Homology Detection, Probabilistic Mo

LSTM for biological sequence analysis 1.0

by mhex - July 28, 2010, 16:32:29 CET [ ] 17217 views, 3905 downloads, 0 subscriptions

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About: Implementation of LSTM for biological sequence analysis (classification, regression, motif discovery, remote homology detection). Additionally a LSTM as logistic regression with spectrum kernel is included.

Changes:

Spectrum LSTM package included

Authors: Martin Heusel, Sepp Hochreiter
License: Gnu Gpl V2
Programming Language: Java

Operating System: Platform Independent
Data Formats: Fasta
Tags: Bioinformatics, Sequence Analysis, Classification, Regression, Parallel, Recurrent Neural Networks, Motif Discovery, Genetic, Proteins, Remote Homology Detection, Multi Core, Multi Threaded

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pHMM4weka 1.0

LSTM for biological sequence analysis 1.0