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- Description:
SeqAn is an open source C++ library of efficient algorithms and data structures for the analysis of sequences with the focus on biological data. Our library applies a unique generic design that guarantees high performance, generality, extensibility, and integration with other libraries. SeqAn is easy to use and simplifies the development of new software tools with a minimal loss of performance.
- Changes to previous version:
- 5 more applications, i.e. DFI, MicroRazerS, PairAlign, SeqCons, TreeRecon
- stable release of RazerS supporting paired-end read mapping and configurable sensitivity
- new alignment algorithms, e.g. banded, configurable alignments (overlap, semi-global, ...)
- realignment algorithm
- NGS data structures and formats, e.g. SAM, Amos, ...
- new alphabets, e.g. Dna with base call qualities, profile characters
- auxiliary data structures and algorithms, e.g. double ended queue, command line parser
- positional scores
- CMake support
- BibTeX Entry: Download
- Corresponding Paper BibTeX Entry: Download
- Supported Operating Systems: Agnostic
- Data Formats: None
- Tags: Bioinformatics
- Archive: download here
Other available revisons
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Version Changelog Date 1.2 - 5 more applications, i.e. DFI, MicroRazerS, PairAlign, SeqCons, TreeRecon
- stable release of RazerS supporting paired-end read mapping and configurable sensitivity
- new alignment algorithms, e.g. banded, configurable alignments (overlap, semi-global, ...)
- realignment algorithm
- NGS data structures and formats, e.g. SAM, Amos, ...
- new alphabets, e.g. Dna with base call qualities, profile characters
- auxiliary data structures and algorithms, e.g. double ended queue, command line parser
- positional scores
- CMake support
November 2, 2009, 14:54:08 1.1 Initial Announcement on mloss.org.
May 30, 2009, 22:04:50
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