Description:

The toolbox from the paper Near-optimal Experimental Design for Model Selection in Systems Biology (Busetto et al. 2013, submitted) implemented in MATLAB.

EDT is based heavily on the Mutual Information Toolbox (http://www.inf.ethz.ch/personal/kgabriel/software/mit.zip) and also requires the Systems Biology Toolbox 2 (http://www.sbtoolbox2.org/) and the Submodular Function Optimization Toolbox (http://las.ethz.ch/sfo/index.html).

The Mutual Information Toolbox (MIT) is documented in Appendix A of the master's thesis "Entropy-based Experimental Design for Model Selection in Systems Biology" (http://n.ethz.ch/~alhauser/master/master.pdf#page=66) of Alain Hauser, 2009 ETH Zurich.

Documentation for the Experimental Design Toolbox is available here: http://www.inf.ethz.ch/personal/kgabriel/software/edt.pdf

Changes to previous version:

Initial Announcement on mloss.org.

BibTeX Entry: Download

Supported Operating Systems: Platform Independent

Data Formats: Sbml

Tags: Experimental Design, Submodularity, Bayesian

Archive: download here

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