-
- Description:
PALMA computes the optimal spliced alignment of a mRNA sequence to a genomic sequence. The main python script takes two FASTA files containing the target (e.g. a DNA sequence, part of the genome) and query sequences (e.g. a cDNA or EST sequence). It creates an alignment using dynamic programming (written in c++), and returns the alignment.
- Changes to previous version:
Initial Announcement on mloss.org.
- BibTeX Entry: Download
- Supported Operating Systems: Linux, Macosx
- Data Formats: None
- Tags: Bioinformatics, Shogun, Alignment, Sequence Analysis, Structured Outputs
- Archive: download here
Comments
No one has posted any comments yet. Perhaps you'd like to be the first?
Leave a comment
You must be logged in to post comments.