About:
A Java framework for statistical analysis and classification of biological sequences
Changes:
New classes and packages:
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Jstacs 2.3 is the first release to be accompanied by JstacsFX, a library for building JavaFX-based graphical user interfaces based on JstacsTools
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new interface MultiThreadedFunction
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new class LargeSequenceReader for reading large sequence files in chunks
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new interface QuickScanningSequenceScore
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new class RegExpValidator for checking String inputs against a regular expression
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new class IUPACDNAAlphabet
New features and improvements:
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Alignments may now handle different costs for insert and delete gaps
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ListResults may now be constructed from Collections of ResultSets
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Several minor improvements and bugfixes in many classes
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Improvements of documentation of several classes
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- Operating System:
Cygwin,
Linux,
Macosx,
Windows,
Unix,
Agnostic,
Solaris,
Freebsd,
Platform Independent
- Data Formats:
Plain Ascii,
Fasta
- JMLR-MLOSS Publication:
JMLR Page
- Tags:
Bioinformatics,
R,
Classification,
Machine Learning,
Bayesian Networks,
Markov Random Fields,
Supervised Learning,
Em,
Mixture Models,
Java,
Learning Principles,
Probabilistic Models,
Motif Discovery
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