mloss.org PALMA: mRNA to Genome Alignments using Large Margin Algorithmshttp://mloss.orgUpdates and additions to PALMA: mRNA to Genome Alignments using Large Margin AlgorithmsenMon, 15 Jun 2009 06:53:39 -0000PALMA: mRNA to Genome Alignments using Large Margin Algorithms 0.3.7http://mloss.org/software/view/10/<html><p>PALMA computes the optimal spliced alignment of a mRNA sequence to a genomic sequence. The main python script takes two FASTA files containing the target (e.g. a DNA sequence, part of the genome) and query sequences (e.g. a cDNA or EST sequence). It creates an alignment using dynamic programming (written in c++), and returns the alignment. </p></html>Uta Schulze, Bettina Hepp, Cheng Soon Ong, Gunnar RaetschMon, 26 Nov 2007 21:14:57 -0000http://mloss.org/software/rss/comments/10http://mloss.org/software/view/10/bioinformaticsshogunalignmentsequence analysisstructured outputs<b>Comment by KattyBlackyard on 2009-06-15 06:53</b>http://mloss.org/comments/cr/14/10/#c374<p>I really like your post. Does it copyright protected?</p> KattyBlackyardMon, 15 Jun 2009 06:53:39 -0000http://mloss.org/comments/cr/14/10/#c374