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Logo svmPRAT 1.0

by rangwala - December 28, 2009, 00:27:03 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 5762 views, 1441 downloads, 1 subscription

About: BACKGROUND:Over the last decade several prediction methods have been developed for determining the structural and functional properties of individual protein residues using sequence and sequence-derived information. Most of these methods are based on support vector machines as they provide accurate and generalizable prediction models. RESULTS:We present a general purpose protein residue annotation toolkit (svmPRAT) to allow biologists to formulate residue-wise prediction problems. svmPRAT formulates the annotation problem as a classification or regression problem using support vector machines. One of the key features of svmPRAT is its ease of use in incorporating any user-provided information in the form of feature matrices. For every residue svmPRAT captures local information around the reside to create fixed length feature vectors. svmPRAT implements accurate and fast kernel functions, and also introduces a flexible window-based encoding scheme that accurately captures signals and pattern for training eective predictive models. CONCLUSIONS:In this work we evaluate svmPRAT on several classification and regression problems including disorder prediction, residue-wise contact order estimation, DNA-binding site prediction, and local structure alphabet prediction. svmPRAT has also been used for the development of state-of-the-art transmembrane helix prediction method called TOPTMH, and secondary structure prediction method called YASSPP. This toolkit developed provides practitioners an efficient and easy-to-use tool for a wide variety of annotation problems. Availability: http://www.cs.gmu.edu/~mlbio/svmprat/

Changes:

Initial Announcement on mloss.org.


About: The package estimates the matrix of partial correlations based on different regularized regression methods: lasso, adaptive lasso, PLS, and Ridge Regression.

Changes:

Initial Announcement on mloss.org.


Logo NetPro 1.1.17

by lml - January 25, 2011, 19:02:53 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 5724 views, 1373 downloads, 1 subscription

About: Tools for functional network analysis.

Changes:

Initial Announcement on mloss.org.


Logo mldata.org svn-r1070-Apr-2011

by sonne - April 8, 2011, 10:15:49 CET [ Project Homepage BibTeX Download ] 5706 views, 1330 downloads, 1 subscription

About: The source code of the mldata.org site - a community portal for machine learning data sets.

Changes:

Initial Announcement on mloss.org.


Logo Linear SVM with general regularization 1.0

by rflamary - October 5, 2012, 15:34:21 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 5675 views, 1576 downloads, 1 subscription

About: This package is an implementation of a linear svm solver with a wide class of regularizations on the svm weight vector (l1, l2, mixed norm l1-lq, adaptive lasso). We provide solvers for the classical single task svm problem and for multi-task with joint feature selection or similarity promoting term.

Changes:

Initial Announcement on mloss.org.


About: The High Dimensional Discriminant Analysis (HDDA) toolbox contains an efficient supervised classifier for high-dimensional data. This classifier is based on Gaussian models adapted for [...]

Changes:

Initial Announcement on mloss.org.


About: Matlab implementation of variational gaussian approximate inference for Bayesian Generalized Linear Models.

Changes:

Code restructure and bug fix.


Logo GraphDemo 1.0

by ule - November 27, 2007, 20:11:21 CET [ Project Homepage BibTeX Download ] 5657 views, 1523 downloads, 0 subscriptions

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About: The GraphDemo provides Matlab GUIs to explore similarity graphs and their use in machine learning. It aims to highlight the behavior of different kinds of similarity graphs and to demonstrate their [...]

Changes:

Initial Announcement on mloss.org.


Logo r-cran-boost 1.0-0

by r-cran-robot - December 9, 2004, 22:57:00 CET [ Project Homepage BibTeX Download ] 5657 views, 1582 downloads, 1 subscription

About: Boosting Methods for Real and Simulated Data

Changes:

Fetched by r-cran-robot on 2009-06-24 07:16:09.478727


Logo MLWizard 5.2

by remat - July 26, 2012, 15:04:14 CET [ Project Homepage BibTeX Download ] 5640 views, 1354 downloads, 1 subscription

About: MLwizard recommends and optimizes classification algorithms based on meta-learning and is a software wizard fully integrated into RapidMiner but can be used as library as well.

Changes:

Faster parameter optimization using genetic algorithm with predefined start population.


Showing Items 361-370 of 635 on page 37 of 64: First Previous 32 33 34 35 36 37 38 39 40 41 42 Next Last