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Logo svmPRAT 1.0

by rangwala - December 28, 2009, 00:27:03 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 4632 views, 1196 downloads, 1 subscription

About: BACKGROUND:Over the last decade several prediction methods have been developed for determining the structural and functional properties of individual protein residues using sequence and sequence-derived information. Most of these methods are based on support vector machines as they provide accurate and generalizable prediction models. RESULTS:We present a general purpose protein residue annotation toolkit (svmPRAT) to allow biologists to formulate residue-wise prediction problems. svmPRAT formulates the annotation problem as a classification or regression problem using support vector machines. One of the key features of svmPRAT is its ease of use in incorporating any user-provided information in the form of feature matrices. For every residue svmPRAT captures local information around the reside to create fixed length feature vectors. svmPRAT implements accurate and fast kernel functions, and also introduces a flexible window-based encoding scheme that accurately captures signals and pattern for training eective predictive models. CONCLUSIONS:In this work we evaluate svmPRAT on several classification and regression problems including disorder prediction, residue-wise contact order estimation, DNA-binding site prediction, and local structure alphabet prediction. svmPRAT has also been used for the development of state-of-the-art transmembrane helix prediction method called TOPTMH, and secondary structure prediction method called YASSPP. This toolkit developed provides practitioners an efficient and easy-to-use tool for a wide variety of annotation problems. Availability:


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Logo SnOB beta

by risi - October 5, 2008, 21:39:18 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 4628 views, 1020 downloads, 1 subscription

About: SnOB is a C++ library implementing fast Fourier transforms on the symmetric group (group of permutations). Such Fourier transforms are used by some ranking and identity management algorithms, as [...]


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Logo r-cran-sda 1.2.1

by r-cran-robot - January 22, 2012, 00:00:00 CET [ Project Homepage BibTeX Download ] 4614 views, 1025 downloads, 0 subscriptions

About: Shrinkage Discriminant Analysis and CAT Score Variable Selection


Fetched by r-cran-robot on 2012-02-01 00:00:11.559491

Logo r-cran-boost 1.0-0

by r-cran-robot - December 9, 2004, 22:57:00 CET [ Project Homepage BibTeX Download ] 4592 views, 1268 downloads, 1 subscription

About: Boosting Methods for Real and Simulated Data


Fetched by r-cran-robot on 2009-06-24 07:16:09.478727

Logo MOSIS 0.55

by claasahl - March 9, 2014, 17:35:40 CET [ BibTeX Download ] 4591 views, 1522 downloads, 2 subscriptions

About: MOSIS is a modularized framework for signal processing, stream analysis, machine learning and stream mining applications.

  • Move "flow"-related classes into package "de.claas.mosis.flow" (e.g. Node and Link).
  • Refined and improved "flow"-related tests (e.g. Iterator and Node tests).
  • Refactored tests for data formats (e.g. PlainText and JSON tests).
  • Added visitor design pattern for graph-based functions (e.g. initialization and processing).
  • Documented parameters of Processor implementations.

Logo Rchemcpp 1.99.0

by klambaue - September 10, 2013, 09:10:13 CET [ Project Homepage BibTeX Download ] 4516 views, 1166 downloads, 1 subscription

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About: The Rchemcpp package implements the marginalized graph kernel and extensions, Tanimoto kernels, graph kernels, pharmacophore and 3D kernels suggested for measuring the similarity of molecules.


Moved from CRAN to Bioconductor. Improved handling of molecules, visualization and examples.

About: Multi-class vector classification based on cost function-driven learning vector quantization , minimizing misclassification.


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Logo DiffSharp 0.7.4

by gbaydin - October 27, 2015, 16:27:35 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 4476 views, 917 downloads, 3 subscriptions

About: DiffSharp is an automatic differentiation (AD) library providing gradients, Hessians, Jacobians, directional derivatives, and matrix-free Hessian- and Jacobian-vector products. It allows exact and efficient calculation of derivatives, with support for nesting.


Improved: Overall performance improvements with parallelization and memory reshaping in OpenBLAS backend

Fixed: Bug fixes in reverse AD Make_DM_ofDV and DV.Append

Fixed: Bug fixes in DM operations map2Cols, map2Rows, mapi2Cols, mapi2Rows

Added: New operation primalDeep for the deepest primal value in nested AD values

Logo Nen Beta

by pascal - February 19, 2012, 00:31:34 CET [ Project Homepage BibTeX Download ] 4460 views, 1253 downloads, 1 subscription

About: 3-layer neural network for regression with sigmoid activation function and command line interface similar to LibSVM.


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Logo boostree 0.1

by xavierc - December 1, 2007, 03:16:14 CET [ BibTeX Download ] 4441 views, 1620 downloads, 0 comments, 0 subscriptions

About: This package provides an implementation Schapire and Singer's AdaBoost.MH for multi-label classification. As a main feature, the package provides decision-tree weak learning, a generalization of [...]


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