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Logo NetPro 1.1.17

by lml - January 25, 2011, 19:02:53 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 3126 views, 737 downloads, 1 subscription

About: Tools for functional network analysis.

Changes:

Initial Announcement on mloss.org.


Logo Kernel Machine Library 0.2

by pawelm - December 27, 2011, 17:14:01 CET [ Project Homepage BibTeX BibTeX for corresponding Paper ] 3106 views, 116 downloads, 1 subscription

About: The Kernel-Machine Library is a free (released under the LGPL) C++ library to promote the use of and progress of kernel machines.

Changes:

Updated mloss entry (minor fixes).


Logo Some essential Matlab extensions 1.0

by mseeger - November 10, 2007, 22:15:31 CET [ Project Homepage BibTeX Download ] 3081 views, 836 downloads, 0 comments, 0 subscriptions

About: This is a set of MATLAB(R) functions and MEX files which I wrote to make working with this system somewhat bearable. They allow to call BLAS and LAPACK functions, which do very efficient dense [...]

Changes:

Initial Announcement on mloss.org.


About: Matlab implementation of variational gaussian approximate inference for Bayesian Generalized Linear Models.

Changes:

Code restructure and bug fix.


Logo Figue 1.0.1

by lerhumcbon - August 17, 2010, 04:03:35 CET [ Project Homepage BibTeX Download ] 3064 views, 682 downloads, 1 subscription

About: A collection of clustering algorithms implemented in Javascript.

Changes:

Initial Announcement on mloss.org.


Logo r-cran-elasticnet 1.1

by r-cran-robot - June 25, 2012, 00:00:00 CET [ Project Homepage BibTeX Download ] 3051 views, 684 downloads, 1 subscription

About: Elastic-Net for Sparse Estimation and Sparse PCA

Changes:

Fetched by r-cran-robot on 2013-04-01 00:00:04.831694


Logo Somoclu 1.3.1

by peterwittek - April 10, 2014, 06:41:38 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 3050 views, 580 downloads, 2 subscriptions

About: Somoclu is a massively parallel implementation of self-organizing maps. It relies on OpenMP for multicore execution, MPI for distributing the workload, and it can be accelerated by CUDA on a GPU cluster. A sparse kernel is also included, which is useful for training maps on vector spaces generated in text mining processes.

Changes:
  • Initial Windows support through GCC on Windows.
  • Better I/O separation for the Python, R, and MATLAB interfaces.
  • Bug fixes: major MPI initialization bug fixed.

Logo pHMM4weka 1.0

by smm52 - October 22, 2010, 03:48:07 CET [ Project Homepage BibTeX Download ] 3040 views, 897 downloads, 1 subscription

About: This Java software implements Profile Hidden Markov Models (PHMMs) for protein classification for the WEKA workbench. Standard PHMMs and newly introduced binary PHMMs are used. In addition the software allows propositionalisation of PHMMs.

Changes:

description changed


Logo HDDM 0.5

by Wiecki - April 24, 2013, 02:53:07 CET [ Project Homepage BibTeX Download ] 3021 views, 801 downloads, 1 subscription

About: HDDM is a python toolbox for hierarchical Bayesian parameter estimation of the Drift Diffusion Model (via PyMC). Drift Diffusion Models are used widely in psychology and cognitive neuroscience to study decision making.

Changes:
  • New and improved HDDM model with the following changes:
    • Priors: by default model will use informative priors (see http://ski.clps.brown.edu/hddm_docs/methods.html#hierarchical-drift-diffusion-models-used-in-hddm) If you want uninformative priors, set informative=False.
    • Sampling: This model uses slice sampling which leads to faster convergence while being slower to generate an individual sample. In our experiments, burnin of 20 is often good enough.
    • Inter-trial variablity parameters are only estimated at the group level, not for individual subjects.
    • The old model has been renamed to HDDMTransformed.
    • HDDMRegression and HDDMStimCoding are also using this model.
  • HDDMRegression takes patsy model specification strings. See http://ski.clps.brown.edu/hddm_docs/howto.html#estimate-a-regression-model and http://ski.clps.brown.edu/hddm_docs/tutorial_regression_stimcoding.html#chap-tutorial-hddm-regression
  • Improved online documentation at http://ski.clps.brown.edu/hddm_docs
  • A new HDDM demo at http://ski.clps.brown.edu/hddm_docs/demo.html
  • Ratcliff's quantile optimization method for single subjects and groups using the .optimize() method
  • Maximum likelihood optimization.
  • Many bugfixes and better test coverage.
  • hddm_fit.py command line utility is depracated.

About: hapFabia is an R package for identification of very short segments of identity by descent (IBD) characterized by rare variants in large sequencing data.

Changes:

o citation update

o plot function improved


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