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Logo svmPRAT 1.0

by rangwala - December 28, 2009, 00:27:03 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 3810 views, 945 downloads, 1 subscription

About: BACKGROUND:Over the last decade several prediction methods have been developed for determining the structural and functional properties of individual protein residues using sequence and sequence-derived information. Most of these methods are based on support vector machines as they provide accurate and generalizable prediction models. RESULTS:We present a general purpose protein residue annotation toolkit (svmPRAT) to allow biologists to formulate residue-wise prediction problems. svmPRAT formulates the annotation problem as a classification or regression problem using support vector machines. One of the key features of svmPRAT is its ease of use in incorporating any user-provided information in the form of feature matrices. For every residue svmPRAT captures local information around the reside to create fixed length feature vectors. svmPRAT implements accurate and fast kernel functions, and also introduces a flexible window-based encoding scheme that accurately captures signals and pattern for training eective predictive models. CONCLUSIONS:In this work we evaluate svmPRAT on several classification and regression problems including disorder prediction, residue-wise contact order estimation, DNA-binding site prediction, and local structure alphabet prediction. svmPRAT has also been used for the development of state-of-the-art transmembrane helix prediction method called TOPTMH, and secondary structure prediction method called YASSPP. This toolkit developed provides practitioners an efficient and easy-to-use tool for a wide variety of annotation problems. Availability: http://www.cs.gmu.edu/~mlbio/svmprat/

Changes:

Initial Announcement on mloss.org.


Logo Hivemall 0.1

by myui - October 25, 2013, 08:43:12 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 3752 views, 584 downloads, 1 subscription

About: Hivemall is a scalable machine learning library running on Hive/Hadoop, licensed under the LGPL 2.1.

Changes:
  • Enhancement

    • Added AROW regression
    • Added AROW with a hinge loss (arowh_regress())
  • Bugfix

    • Fixed a bug of null feature handling in classification/regression

Logo Gesture Recogition Toolkit 0.1 Revision 289

by ngillian - December 13, 2013, 22:59:53 CET [ Project Homepage BibTeX Download ] 3738 views, 687 downloads, 1 subscription

About: The Gesture Recognition Toolkit (GRT) is a cross-platform, open-source, c++ machine learning library that has been specifically designed for real-time gesture recognition. It features a large number of machine-learning algorithms for both classification and regression in addition to a wide range of supporting algorithms for pre-processing, feature extraction and dataset management. The GRT has been designed for real-time gesture recognition, but it can also be applied to more general machine-learning tasks.

Changes:

Added Decision Tree and Random Forests.


Logo crfpp 0.53

by sonne - May 8, 2009, 08:46:44 CET [ Project Homepage BibTeX Download ] 3735 views, 2643 downloads, 1 subscription

About: CRF++ is a simple, customizable, and open source implementation of Conditional Random Fields (CRFs) for segmenting/labeling sequential data.

Changes:

Initial Announcement on mloss.org.


Logo Thresholding program 1.0

by openpr_nlpr - March 1, 2012, 03:18:52 CET [ Project Homepage BibTeX Download ] 3700 views, 461 downloads, 1 subscription

About: This is demo program on global thresholding for image of bright small objects, such as aircrafts in airports. the program include four method, otsu,2D-Tsallis,PSSIM, Smoothnees Method.

Changes:

Initial Announcement on mloss.org.


Logo Ohmm 0.02

by hillbig - May 21, 2009, 10:07:53 CET [ Project Homepage BibTeX Download ] 3581 views, 985 downloads, 1 subscription

About: Ohmm is a library for learning hidden Markov models by using Online EM algorithm. This library is specialized for large scale data; e.g. 1 million words. The output includes parameters, and estimation results.

Changes:

Initial Announcement on mloss.org.


Logo HDDM 0.5

by Wiecki - April 24, 2013, 02:53:07 CET [ Project Homepage BibTeX Download ] 3546 views, 898 downloads, 1 subscription

About: HDDM is a python toolbox for hierarchical Bayesian parameter estimation of the Drift Diffusion Model (via PyMC). Drift Diffusion Models are used widely in psychology and cognitive neuroscience to study decision making.

Changes:
  • New and improved HDDM model with the following changes:
    • Priors: by default model will use informative priors (see http://ski.clps.brown.edu/hddm_docs/methods.html#hierarchical-drift-diffusion-models-used-in-hddm) If you want uninformative priors, set informative=False.
    • Sampling: This model uses slice sampling which leads to faster convergence while being slower to generate an individual sample. In our experiments, burnin of 20 is often good enough.
    • Inter-trial variablity parameters are only estimated at the group level, not for individual subjects.
    • The old model has been renamed to HDDMTransformed.
    • HDDMRegression and HDDMStimCoding are also using this model.
  • HDDMRegression takes patsy model specification strings. See http://ski.clps.brown.edu/hddm_docs/howto.html#estimate-a-regression-model and http://ski.clps.brown.edu/hddm_docs/tutorial_regression_stimcoding.html#chap-tutorial-hddm-regression
  • Improved online documentation at http://ski.clps.brown.edu/hddm_docs
  • A new HDDM demo at http://ski.clps.brown.edu/hddm_docs/demo.html
  • Ratcliff's quantile optimization method for single subjects and groups using the .optimize() method
  • Maximum likelihood optimization.
  • Many bugfixes and better test coverage.
  • hddm_fit.py command line utility is depracated.

Logo Rudder 0.1

by dmcnelis - December 16, 2011, 22:00:45 CET [ Project Homepage BibTeX Download ] 3537 views, 1158 downloads, 1 subscription

About: An annotated java framework for machine learning, aimed at making it really easy to access analytically functions.

Changes:

Now supports OLS and GLS regression and NaiveBayes classification


Logo Kernel Machine Library 0.2

by pawelm - December 27, 2011, 17:14:01 CET [ Project Homepage BibTeX BibTeX for corresponding Paper ] 3530 views, 138 downloads, 1 subscription

About: The Kernel-Machine Library is a free (released under the LGPL) C++ library to promote the use of and progress of kernel machines.

Changes:

Updated mloss entry (minor fixes).


Logo r-cran-sda 1.2.1

by r-cran-robot - January 22, 2012, 00:00:00 CET [ Project Homepage BibTeX Download ] 3519 views, 760 downloads, 0 subscriptions

About: Shrinkage Discriminant Analysis and CAT Score Variable Selection

Changes:

Fetched by r-cran-robot on 2012-02-01 00:00:11.559491


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