Project details for Weight HMM

Logo Weight HMM 1.0

by SongTao - May 27, 2014, 15:29:20 CET [ BibTeX Download ]

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Description:

Short linear motifs (SLiMs) in proteins are relatively conservative sequence patterns within disordered regions of proteins, typically 3-10 amino acids in length. They play an important role in mediating protein-protein interactions. Discovering SLiMs by computational methods has attracted more and more attention. Most of them are based on regular expressions and profiles. we extend these approaches to a profile HMM-based method, and employ the relative local conservation masking and evolutionary weighting in this method.

Changes to previous version:

Initial Announcement on mloss.org.

BibTeX Entry: Download
Supported Operating Systems: Linux
Data Formats: Fasta
Tags: Bioinformatics
Archive: download here

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