Project details for seqan

Logo seqan 1.2

by sonne - November 2, 2009, 14:54:08 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ]

view (6 today), download ( 0 today ), 1 subscription

Description:

SeqAn is an open source C++ library of efficient algorithms and data structures for the analysis of sequences with the focus on biological data. Our library applies a unique generic design that guarantees high performance, generality, extensibility, and integration with other libraries. SeqAn is easy to use and simplifies the development of new software tools with a minimal loss of performance.

Changes to previous version:
  • 5 more applications, i.e. DFI, MicroRazerS, PairAlign, SeqCons, TreeRecon
  • stable release of RazerS supporting paired-end read mapping and configurable sensitivity
  • new alignment algorithms, e.g. banded, configurable alignments (overlap, semi-global, ...)
  • realignment algorithm
  • NGS data structures and formats, e.g. SAM, Amos, ...
  • new alphabets, e.g. Dna with base call qualities, profile characters
  • auxiliary data structures and algorithms, e.g. double ended queue, command line parser
  • positional scores
  • CMake support
BibTeX Entry: Download
Corresponding Paper BibTeX Entry: Download
URL: Project Homepage
Supported Operating Systems: Agnostic
Data Formats: None
Tags: Bioinformatics
Archive: download here

Other available revisons

Version Changelog Date
1.2
  • 5 more applications, i.e. DFI, MicroRazerS, PairAlign, SeqCons, TreeRecon
  • stable release of RazerS supporting paired-end read mapping and configurable sensitivity
  • new alignment algorithms, e.g. banded, configurable alignments (overlap, semi-global, ...)
  • realignment algorithm
  • NGS data structures and formats, e.g. SAM, Amos, ...
  • new alphabets, e.g. Dna with base call qualities, profile characters
  • auxiliary data structures and algorithms, e.g. double ended queue, command line parser
  • positional scores
  • CMake support
November 2, 2009, 14:54:08
1.1

Initial Announcement on mloss.org.

May 30, 2009, 22:04:50

Comments

No one has posted any comments yet. Perhaps you'd like to be the first?

Leave a comment

You must be logged in to post comments.