PALMA computes the optimal spliced alignment of a mRNA sequence to a genomic sequence. The main python script takes two FASTA files containing the target (e.g. a DNA sequence, part of the genome) and query sequences (e.g. a cDNA or EST sequence). It creates an alignment using dynamic programming (written in c++), and returns the alignment.
- Changes to previous version:
Initial Announcement on mloss.org.
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