sonne has posted 11 projects.


Logo JMLR SHOGUN 3.2.0

by sonne - February 17, 2014, 20:31:36 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 85486 views, 11845 downloads, 5 subscriptions

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About: The SHOGUN machine learning toolbox's focus is on large scale learning methods with focus on Support Vector Machines (SVM), providing interfaces to python, octave, matlab, r and the command line.

Changes:

This is mostly a bugfix release:

Features

  • Fully support python3 now
  • Add mini-batch k-means [Parijat Mazumdar]
  • Add k-means++ [Parijat Mazumdar]
  • Add sub-sequence string kernel [lambday]

Bugfixes

  • Compile fixes for upcoming swig3.0
  • Speedup for gaussian process' apply()
  • Improve unit / integration test checks
  • libbmrm uninitialized memory reads
  • libocas uninitialized memory reads
  • Octave 3.8 compile fixes [Orion Poplawski]
  • Fix java modular compile error [Bjoern Esser]

Logo mldata.org svn-r1070-Apr-2011

by sonne - April 8, 2011, 10:15:49 CET [ Project Homepage BibTeX Download ] 3788 views, 708 downloads, 1 subscription

About: The source code of the mldata.org site - a community portal for machine learning data sets.

Changes:

Initial Announcement on mloss.org.


Logo mldata-utils 0.5.0

by sonne - April 8, 2011, 10:02:44 CET [ Project Homepage BibTeX Download ] 19567 views, 4074 downloads, 1 subscription

About: Tools to convert datasets from various formats to various formats, performance measures and API functions to communicate with mldata.org

Changes:
  • Change task file format, such that data splits can have a variable number items and put into up to 256 categories of training/validation/test/not used/...
  • Various bugfixes.

Logo mloss.org svn-r645-Mar-2011

by sonne - March 23, 2011, 11:09:18 CET [ Project Homepage BibTeX Download ] 14819 views, 2057 downloads, 1 subscription

About: This is the source code of the mloss.org website.

Changes:

Now works with newer django versions and fixes several warnings and minor bugs underneath. The only user visible change is probably that the subscription and bookmark buttons work again.


Logo asp 0.3

by sonne - May 7, 2010, 10:25:39 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 7544 views, 1497 downloads, 1 subscription

About: Accurate splice site predictor for a variety of genomes.

Changes:

Asp now supports three formats:

-g fname for gff format

-s fname for spf format

-b dir for a binary format compatible with mGene.

And a new switch

-t which switches on a sigmoid-based transformation of the svm scores to get scores between 0 and 1.


Logo seqan 1.2

by sonne - November 2, 2009, 14:54:08 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 6150 views, 1183 downloads, 1 subscription

About: SeqAn is an open source C++ library of efficient algorithms and data structures for the analysis of sequences with the focus on biological data.

Changes:
  • 5 more applications, i.e. DFI, MicroRazerS, PairAlign, SeqCons, TreeRecon
  • stable release of RazerS supporting paired-end read mapping and configurable sensitivity
  • new alignment algorithms, e.g. banded, configurable alignments (overlap, semi-global, ...)
  • realignment algorithm
  • NGS data structures and formats, e.g. SAM, Amos, ...
  • new alphabets, e.g. Dna with base call qualities, profile characters
  • auxiliary data structures and algorithms, e.g. double ended queue, command line parser
  • positional scores
  • CMake support

Logo COIN OR 1.2

by sonne - July 13, 2009, 10:51:10 CET [ Project Homepage BibTeX Download ] 3040 views, 915 downloads, 1 subscription

About: The Computational Infrastructure for Operations Research (COIN-OR) project is an initiative to spur the development of open-source software for the operations research community.

Changes:

Initial Announcement on mloss.org.


Logo SeDuMi 1.21

by sonne - July 13, 2009, 10:22:00 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 5460 views, 1118 downloads, 1 subscription

About: SeDuMi is a software package to solve optimization problems over symmetric cones. This includes linear, quadratic, second order conic and semidefinite optimization, and any combination of these.

Changes:

Initial Announcement on mloss.org.


Logo arts 0.2

by sonne - May 25, 2009, 09:56:31 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 4439 views, 927 downloads, 1 subscription

About: ARTS is an accurate predictor for Transcription Start Sites (TSS).

Changes:

Initial Announcement on mloss.org.


Logo crfpp 0.53

by sonne - May 8, 2009, 08:46:44 CET [ Project Homepage BibTeX Download ] 3690 views, 2626 downloads, 1 subscription

About: CRF++ is a simple, customizable, and open source implementation of Conditional Random Fields (CRFs) for segmenting/labeling sequential data.

Changes:

Initial Announcement on mloss.org.


Logo mSplicer 0.3

by sonne - May 18, 2008, 13:07:40 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 5652 views, 1170 downloads, 3 subscriptions

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About: For modern biology, precise genome annotations are of prime importance as they allow the accurate definition of genic regions. We employ state of the art machine learning methods to assay and [...]

Changes:

Initial Announcement on mloss.org.