UBod has posted 2 projects.


Logo KeBABS 1.0.3

by UBod - January 28, 2015, 10:19:33 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 1334 views, 212 downloads, 1 subscription

About: Kernel-Based Analysis Of Biological Sequences

Changes:
  • extension of function linearKernel to optionally return a sparse kernel matrix
  • new accessor SVindex for class KBModel
  • error correction in subsetting of sparse explicit representation for head / tail
  • error correction of vector length overflow in sparse explicit representation for very large number of sequences in spectrum, gappy pair and motif kernel
  • error correction for training with position specific kernel and computation of feature weights
  • error correction in coercion of kernel to character for distance weighting
  • error correction in subsetting of prediction profile
  • error correction in spectrum, gappy pair and motif kernel for kernel matrix - last feature was missing in kernel value in rare situations
  • error correction and minor C code changes for mismatch kernel
  • check uniqueness of motifs in motif kernel
  • build warnings on Windows removed
  • minor changes in help pages
  • change name of vignette Rnw to lowercase
  • minor changes in vignette

Logo APCluster 1.4.1

by UBod - December 10, 2014, 12:58:29 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 19395 views, 3525 downloads, 3 subscriptions

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About: The apcluster package implements Frey's and Dueck's Affinity Propagation clustering in R. The package further provides leveraged affinity propagation, exemplar-based agglomerative clustering, and various tools for visual analysis of clustering results.

Changes:
  • fixes in C++ code of sparse affinity propagation