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Logo svmPRAT 1.0

by rangwala - December 28, 2009, 00:27:03 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 3622 views, 896 downloads, 1 subscription

About: BACKGROUND:Over the last decade several prediction methods have been developed for determining the structural and functional properties of individual protein residues using sequence and sequence-derived information. Most of these methods are based on support vector machines as they provide accurate and generalizable prediction models. RESULTS:We present a general purpose protein residue annotation toolkit (svmPRAT) to allow biologists to formulate residue-wise prediction problems. svmPRAT formulates the annotation problem as a classification or regression problem using support vector machines. One of the key features of svmPRAT is its ease of use in incorporating any user-provided information in the form of feature matrices. For every residue svmPRAT captures local information around the reside to create fixed length feature vectors. svmPRAT implements accurate and fast kernel functions, and also introduces a flexible window-based encoding scheme that accurately captures signals and pattern for training eective predictive models. CONCLUSIONS:In this work we evaluate svmPRAT on several classification and regression problems including disorder prediction, residue-wise contact order estimation, DNA-binding site prediction, and local structure alphabet prediction. svmPRAT has also been used for the development of state-of-the-art transmembrane helix prediction method called TOPTMH, and secondary structure prediction method called YASSPP. This toolkit developed provides practitioners an efficient and easy-to-use tool for a wide variety of annotation problems. Availability: http://www.cs.gmu.edu/~mlbio/svmprat/

Changes:

Initial Announcement on mloss.org.


Logo SVMStructMATLAB 1.2

by andreavedaldi - September 12, 2012, 00:25:57 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 7528 views, 1461 downloads, 1 subscription

About: svm-struct-matlab is a MATLAB wrapper of T. Joachims' SVM^struct solver for structured output support vector machines.

Changes:

Adds support for Xcode 4.0 and Mac OS X 10.7 and greater.


Logo SVQP 2

by leonbottou - January 31, 2009, 14:22:04 CET [ Project Homepage BibTeX Download ] 5035 views, 1690 downloads, 0 subscriptions

About: SVQP1 and SVQP2 are QP solvers for training SVM.

Changes:

Initial Announcement on mloss.org.


Logo JMLR Tapkee 1.0

by blackburn - April 10, 2014, 02:45:58 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 5425 views, 1502 downloads, 1 subscription

About: Tapkee is an efficient and flexible C++ template library for dimensionality reduction.

Changes:

Initial Announcement on mloss.org.


About: TBEEF, a doubly ensemble framework for recommendation and prediction problems.

Changes:

Updated the included documentation.


Logo Tekkotsu 4.0

by touretzky - December 5, 2007, 10:28:02 CET [ Project Homepage BibTeX Download ] 4487 views, 1002 downloads, 0 subscriptions

About: Tekkotsu is a high-level framework for robot programming that provides primitives for perception, manipulation, navigation, and control. It supports a variety of robot platforms.

Changes:

Initial Announcement on mloss.org.


Logo Test 1.0

by willyie - August 23, 2013, 23:05:22 CET [ BibTeX Download ] 574 views, 194 downloads, 1 subscription

About: Test submission. Is MLOSS working?

Changes:

Initial Announcement on mloss.org.


Logo Thalasso v0.2

by rherault - July 22, 2013, 15:33:59 CET [ Project Homepage BibTeX Download ] 834 views, 235 downloads, 1 subscription

About: Regularization paTH for LASSO problem (thalasso) thalasso solves problems of the following form: minimize 1/2||X*beta-y||^2 + lambda*sum|beta_i|, where X and y are problem data and beta and lambda are variables.

Changes:

Initial Announcement on mloss.org.


Logo The Choquet Kernel 1.00

by AliFall - February 11, 2014, 16:21:15 CET [ BibTeX BibTeX for corresponding Paper Download ] 683 views, 180 downloads, 1 subscription

About: The package computes the optimal parameters for the Choquet kernel

Changes:

Initial Announcement on mloss.org.


About: The glm-ie toolbox contains scalable estimation routines for GLMs (generalised linear models) and SLMs (sparse linear models) as well as an implementation of a scalable convex variational Bayesian inference relaxation. We designed the glm-ie package to be simple, generic and easily expansible. Most of the code is written in Matlab including some MEX files. The code is fully compatible to both Matlab 7.x and GNU Octave 3.2.x. Probabilistic classification, sparse linear modelling and logistic regression are covered in a common algorithmical framework allowing for both MAP estimation and approximate Bayesian inference.

Changes:

added factorial mean field inference as a third algorithm complementing expectation propagation and variational Bayes

generalised non-Gaussian potentials so that affine instead of linear functions of the latent variables can be used


Showing Items 491-500 of 537 on page 50 of 54: First Previous 45 46 47 48 49 50 51 52 53 54 Next