About: C++ software for statistical classification, probability estimation and interpolation/non-linear regression using variable bandwidth kernel estimation.

New in Version 0.9.6:

• Many, many bug fixes. Thanks to all who submitted bug reports!

• New Bash script to validate probability density function (PDF) calculations: validate_pdf.sh

• New command for generating a simulated data set with approximately the same PDF as the training data: pdf_sim . Used by validate_pdf.sh

• New file utility that randomly splits up a dataset into two or more divisions: agf_split_data . Also used by validate_pdf.sh

• New command generates the Relative Operating Characteristic (ROC) curve: roc_curve

About: This Java software implements Profile Hidden Markov Models (PHMMs) for protein classification for the WEKA workbench. Standard PHMMs and newly introduced binary PHMMs are used. In addition the software allows propositionalisation of PHMMs.

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