Projects that are tagged with r.


Logo opusminer 0.1-0

by opusminer - February 23, 2017, 01:01:18 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 883 views, 143 downloads, 3 subscriptions

About: The new R package opusminer provides an R interface to the OPUS Miner algorithm (implemented in C++) for finding the key associations in transaction data efficiently, in the form of self-sufficient itemsets, using either leverage or lift.

Changes:

Initial Announcement on mloss.org.


Logo ADAMS 16.12.1

by fracpete - December 22, 2016, 05:24:00 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 28030 views, 5183 downloads, 3 subscriptions

About: The Advanced Data mining And Machine learning System (ADAMS) is a novel, flexible workflow engine aimed at quickly building and maintaining real-world, complex knowledge workflows.

Changes:

Some highlights:

  • Over 80 new actors, nearly 30 new conversions
  • Weka Investigator -- the big brother of the Weka Explorer, or how to be more efficient with less clicks using multiple datasets in multiple sessions and multiple predefined outputs per evaluation run
  • Weka Multi-Experimenter -- simple interface for running Weka and ADAMS experiments.
  • File commander -- dual-pane file manager (inspired by Norton/Midnight commander) that allows you to manage local and remote files (ftp, sftp, smb); usually faster than native file managers (like Windows Explorer, Nautilus, Caja) in terms of handling 10s of thousand of files in a single directory
  • experimental deeplearning4j module
  • module for querying/consuming webservices using Groovy
  • basic terminal-based GUI for remote machines (eg cloud)
  • many interactive actors can be used in headless environment now as well
  • Fixed a memory leak introduced by Java's logging framework
  • Flow editor now has predefined rules for swapping actors, e.g. Trigger with Tee or ConditionalTrigger, maintaining as many options as possible (including any sub-actors).
  • improved imaging and PDF support

Logo JMLR Jstacs 2.2

by keili - February 17, 2016, 11:57:56 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 28434 views, 6526 downloads, 3 subscriptions

About: A Java framework for statistical analysis and classification of biological sequences

Changes:

New classes and packages:

  • CorreationCoefficient: PerformanceMeasure
  • de.jstacs.clustering: package with classes for hierarchical clustering
  • DeBruijnGraphSequenceGenerator and DeBruijnSequenceGenerator for generating De Buijn sequences
  • CyclicSequenceAdaptor for representing cyclic sequences
  • PlotGeneratorResult for representing results that plot images to a Graphics2D object
  • TextResult for results that may be stored as text files
  • package de.jstacs.results.savers for generic classes that store results to disk
  • LimitedSparseLocalInhomogeneousMixtureDiffSM_higherOrder for sparse local inhomogeneous mixture (Slim) models
  • PFMWrapperTrainSM for representing position frequency matrices and position weight matrices from databases
  • package de.jstacs.tools with classes for generic Jstacs tools that may be used in different user interfaces (command line, Galaxy, JavaFX)
  • Compression for ZIP compression of Strings
  • package de.jstacs.utils.graphics with generic GraphicsAdaptor using Apache XML commons
  • projects: Dimont, GeMoMa, Slim, TALEN, motif comparison

New features and improvements:

  • Major restructuring of Alignment for better efficiency
  • Alignment Costs and StringAlignment now Storable
  • New constructor of DataSet allowing a specified percentage of sequences to mismatch the given alphabet
  • BioJavaAdapter ported to BioJava 1.9
  • XMLParser now also allows for storing Sequences
  • New method for parsing HMMer profile HMMs in HMMFactory
  • Several minor improvements and bugfixes in many classes
  • Improvements of documentation of several classes

Logo JMLR SHOGUN 4.0.0

by sonne - February 5, 2015, 09:09:37 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 127744 views, 18222 downloads, 6 subscriptions

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About: The SHOGUN machine learning toolbox's focus is on large scale learning methods with focus on Support Vector Machines (SVM), providing interfaces to python, octave, matlab, r and the command line.

Changes:

This release features the work of our 8 GSoC 2014 students [student; mentors]:

  • OpenCV Integration and Computer Vision Applications [Abhijeet Kislay; Kevin Hughes]
  • Large-Scale Multi-Label Classification [Abinash Panda; Thoralf Klein]
  • Large-scale structured prediction with approximate inference [Jiaolong Xu; Shell Hu]
  • Essential Deep Learning Modules [Khaled Nasr; Sergey Lisitsyn, Theofanis Karaletsos]
  • Fundamental Machine Learning: decision trees, kernel density estimation [Parijat Mazumdar ; Fernando Iglesias]
  • Shogun Missionary & Shogun in Education [Saurabh Mahindre; Heiko Strathmann]
  • Testing and Measuring Variable Interactions With Kernels [Soumyajit De; Dino Sejdinovic, Heiko Strathmann]
  • Variational Learning for Gaussian Processes [Wu Lin; Heiko Strathmann, Emtiyaz Khan]

It also contains several cleanups and bugfixes:

Features

  • New Shogun project description [Heiko Strathmann]
  • ID3 algorithm for decision tree learning [Parijat Mazumdar]
  • New modes for PCA matrix factorizations: SVD & EVD, in-place or reallocating [Parijat Mazumdar]
  • Add Neural Networks with linear, logistic and softmax neurons [Khaled Nasr]
  • Add kernel multiclass strategy examples in multiclass notebook [Saurabh Mahindre]
  • Add decision trees notebook containing examples for ID3 algorithm [Parijat Mazumdar]
  • Add sudoku recognizer ipython notebook [Alejandro Hernandez]
  • Add in-place subsets on features, labels, and custom kernels [Heiko Strathmann]
  • Add Principal Component Analysis notebook [Abhijeet Kislay]
  • Add Multiple Kernel Learning notebook [Saurabh Mahindre]
  • Add Multi-Label classes to enable Multi-Label classification [Thoralf Klein]
  • Add rectified linear neurons, dropout and max-norm regularization to neural networks [Khaled Nasr]
  • Add C4.5 algorithm for multiclass classification using decision trees [Parijat Mazumdar]
  • Add support for arbitrary acyclic graph-structured neural networks [Khaled Nasr]
  • Add CART algorithm for classification and regression using decision trees [Parijat Mazumdar]
  • Add CHAID algorithm for multiclass classification and regression using decision trees [Parijat Mazumdar]
  • Add Convolutional Neural Networks [Khaled Nasr]
  • Add Random Forests algorithm for ensemble learning using CART [Parijat Mazumdar]
  • Add Restricted Botlzmann Machines [Khaled Nasr]
  • Add Stochastic Gradient Boosting algorithm for ensemble learning [Parijat Mazumdar]
  • Add Deep contractive and denoising autoencoders [Khaled Nasr]
  • Add Deep belief networks [Khaled Nasr]

Bugfixes

  • Fix reference counting bugs in CList when reference counting is on [Heiko Strathmann, Thoralf Klein, lambday]
  • Fix memory problem in PCA::apply_to_feature_matrix [Parijat Mazumdar]
  • Fix crash in LeastAngleRegression for the case D greater than N [Parijat Mazumdar]
  • Fix memory violations in bundle method solvers [Thoralf Klein]
  • Fix fail in library_mldatahdf5.cpp example when http://mldata.org is not working properly [Parijat Mazumdar]
  • Fix memory leaks in Vowpal Wabbit, LibSVMFile and KernelPCA [Thoralf Klein]
  • Fix memory and control flow issues discovered by Coverity [Thoralf Klein]
  • Fix R modular interface SWIG typemap (Requires SWIG >= 2.0.5) [Matt Huska]

Cleanup and API Changes

  • PCA now depends on Eigen3 instead of LAPACK [Parijat Mazumdar]
  • Removing redundant and fixing implicit imports [Thoralf Klein]
  • Hide many methods from SWIG, reducing compile memory by 500MiB [Heiko Strathmann, Fernando Iglesias, Thoralf Klein]

Logo NetPro 1.1.17

by lml - January 25, 2011, 19:02:53 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 6045 views, 1432 downloads, 1 subscription

About: Tools for functional network analysis.

Changes:

Initial Announcement on mloss.org.


Logo Nested Effects Models 2.4.0

by florian - July 8, 2008, 00:05:59 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 7803 views, 2004 downloads, 1 subscription

About: Nested Effects Models (NEMs) are a class of directed graphical models originally introduced to analyze the effects of gene perturbation screens with high-dimensional phenotypes. In contrast to other [...]

Changes:

Initial Announcement on mloss.org.