Projects that are tagged with r.


Logo JMLR SHOGUN 3.2.0

by sonne - February 17, 2014, 20:31:36 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 51784 views, 10635 downloads, 5 subscriptions

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About: The SHOGUN machine learning toolbox's focus is on large scale learning methods with focus on Support Vector Machines (SVM), providing interfaces to python, octave, matlab, r and the command line.

Changes:

This is mostly a bugfix release:

Features

  • Fully support python3 now
  • Add mini-batch k-means [Parijat Mazumdar]
  • Add k-means++ [Parijat Mazumdar]
  • Add sub-sequence string kernel [lambday]

Bugfixes

  • Compile fixes for upcoming swig3.0
  • Speedup for gaussian process' apply()
  • Improve unit / integration test checks
  • libbmrm uninitialized memory reads
  • libocas uninitialized memory reads
  • Octave 3.8 compile fixes [Orion Poplawski]
  • Fix java modular compile error [Bjoern Esser]

Logo ADAMS 0.4.4

by fracpete - October 25, 2013, 04:10:47 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 4569 views, 1048 downloads, 1 subscription

About: The Advanced Data mining And Machine learning System (ADAMS) is a novel, flexible workflow engine aimed at quickly building and maintaining real-world, complex knowledge workflows.

Changes:
  • Added 30 more conversions and 70 more actors
  • new timeseries module, includes Weka's Forecasting plugin
  • OCR support using TesseractOCR wrapper
  • extended JSON support (value extraction using JSON path)
  • support for processing XML/HTML (DOM generation, XSLT, XPath)
  • SQL-like query language for spreadsheets
  • generic support Java properties files (read/write/modify)
  • generic serialization support
  • support for sequence plotter overlays
  • basic WebServer capability (using Jetty)
  • CSV file reader/writer now support file encodings (eg UTF-8, UTF-16)

Logo JMLR Jstacs 2.1

by keili - June 3, 2013, 07:32:55 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 12468 views, 2885 downloads, 2 subscriptions

About: A Java framework for statistical analysis and classification of biological sequences

Changes:

New classes:

  • MultipleIterationsCondition: Requires another TerminationCondition to fail a contiguous, specified number of times
  • ClassifierFactory: Allows for creating standard classifiers
  • SeqLogoPlotter: Plot PNG sequence logos from within Jstacs
  • MultivariateGaussianEmission: Multivariate Gaussian emission density for a Hidden Markov Model
  • MEManager: Maximum entropy model

New features and improvements:

  • Alignment: Added free shift alignment
  • PerformanceMeasure and sub-classes: Extension to weighted test data
  • AbstractClassifier, ClassifierAssessment and sub-classes: Adaption to weighted PerformanceMeasures
  • DNAAlphabet: Parser speed-up
  • PFMComparator: Extension to PFM from other sources/databases
  • ToolBox: New convenience methods for computing several statistics (e.g., median, correlation)
  • SignificantMotifOccurrencesFinder: New methods for computing PWMs and statistics from predictions
  • SequenceScore and sub-classes: New method toString(NumberFormat)
  • DataSet: Adaption to weighted data, e.g., partitioning
  • REnvironment: Changed several methods from String to CharSequence

Restructuring:

  • changed MultiDimensionalSequenceWrapperDiffSM to MultiDimensionalSequenceWrapperDiffSS

Several minor new features, bug fixes, and code cleanups


Logo NetPro 1.1.17

by lml - January 25, 2011, 19:02:53 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 2898 views, 673 downloads, 1 subscription

About: Tools for functional network analysis.

Changes:

Initial Announcement on mloss.org.


Logo Nested Effects Models 2.4.0

by florian - July 8, 2008, 00:05:59 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 4823 views, 1242 downloads, 1 subscription

About: Nested Effects Models (NEMs) are a class of directed graphical models originally introduced to analyze the effects of gene perturbation screens with high-dimensional phenotypes. In contrast to other [...]

Changes:

Initial Announcement on mloss.org.