Projects that are tagged with probabilistic models.

Logo JMLR Jstacs 2.2

by keili - February 17, 2016, 11:57:56 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 24373 views, 5617 downloads, 3 subscriptions

About: A Java framework for statistical analysis and classification of biological sequences


New classes and packages:

  • CorreationCoefficient: PerformanceMeasure
  • de.jstacs.clustering: package with classes for hierarchical clustering
  • DeBruijnGraphSequenceGenerator and DeBruijnSequenceGenerator for generating De Buijn sequences
  • CyclicSequenceAdaptor for representing cyclic sequences
  • PlotGeneratorResult for representing results that plot images to a Graphics2D object
  • TextResult for results that may be stored as text files
  • package de.jstacs.results.savers for generic classes that store results to disk
  • LimitedSparseLocalInhomogeneousMixtureDiffSM_higherOrder for sparse local inhomogeneous mixture (Slim) models
  • PFMWrapperTrainSM for representing position frequency matrices and position weight matrices from databases
  • package with classes for generic Jstacs tools that may be used in different user interfaces (command line, Galaxy, JavaFX)
  • Compression for ZIP compression of Strings
  • package with generic GraphicsAdaptor using Apache XML commons
  • projects: Dimont, GeMoMa, Slim, TALEN, motif comparison

New features and improvements:

  • Major restructuring of Alignment for better efficiency
  • Alignment Costs and StringAlignment now Storable
  • New constructor of DataSet allowing a specified percentage of sequences to mismatch the given alphabet
  • BioJavaAdapter ported to BioJava 1.9
  • XMLParser now also allows for storing Sequences
  • New method for parsing HMMer profile HMMs in HMMFactory
  • Several minor improvements and bugfixes in many classes
  • Improvements of documentation of several classes

Logo BLOG 0.9.1

by jxwuyi - April 27, 2015, 06:52:05 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 2578 views, 574 downloads, 3 subscriptions

About: Bayesian Logic (BLOG) is a probabilistic modeling language. It is designed for representing relations and uncertainties among real world objects.


Initial Announcement on

Logo Neural network designer 1.1.1

by bragi - December 28, 2012, 11:38:10 CET [ Project Homepage BibTeX Download ] 6111 views, 1413 downloads, 1 subscription

About: a dbms for resonating neural networks. Create and use different types of machine learning algorithms.


AIML compatible (AIML files can be imported); new 'Grid channel' for developing board games; improved topics editor; new demo project: ALice (from AIML); lots of bug-fixes and speed improvements

Logo BCILAB 1.0-beta

by chkothe - January 6, 2012, 23:47:55 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 5858 views, 1252 downloads, 1 subscription

About: MATLAB toolbox for advanced Brain-Computer Interface (BCI) research.


Initial Announcement on

Logo NetPro 1.1.17

by lml - January 25, 2011, 19:02:53 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 5378 views, 1308 downloads, 1 subscription

About: Tools for functional network analysis.


Initial Announcement on

Logo KReator 1.2.3198

by mthimm - December 23, 2010, 12:07:25 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 12080 views, 2625 downloads, 1 subscription

About: KReator is an integrated development environment (IDE) for relational probabilistic knowledge representation languages. At the moment, KReator supports Bayesian Logic Programs (BLPs), Markov Logic Networks (MLNs), Relational Maximum Entropy (RME), Relational Bayesian Networks (RBN), and Probabilistic Prolog (ProbLog).

  • several bugfixes
  • Beta version of ProbLog plugin
  • enhanced command completion in console
  • enhanced error messages for syntax errors
  • refactored logic libraries
  • added prettyprint function in console
  • added syntax highlighting for RBNs

Logo Dependency modeling toolbox 0.2

by lml - April 30, 2010, 14:38:45 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 10581 views, 1627 downloads, 1 subscription

About: Investigation of dependencies between multiple data sources allows the discovery of regularities and interactions that are not seen in individual data sets. The demand for such methods is increasing with the availability and size of co-occurring observations in computational biology, open data initiatives, and in other domains. We provide practical, open access implementations of general-purpose algorithms that help to realize the full potential of these information sources.


Three independent modules (drCCA, pint, MultiWayCCA) have been added.