Projects that are tagged with motif discovery.


Logo JMLR Jstacs 2.3

by keili - September 13, 2017, 14:25:38 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 30081 views, 6892 downloads, 4 subscriptions

About: A Java framework for statistical analysis and classification of biological sequences

Changes:

New classes and packages:

  • Jstacs 2.3 is the first release to be accompanied by JstacsFX, a library for building JavaFX-based graphical user interfaces based on JstacsTools
  • new interface MultiThreadedFunction
  • new class LargeSequenceReader for reading large sequence files in chunks
  • new interface QuickScanningSequenceScore
  • new class RegExpValidator for checking String inputs against a regular expression
  • new class IUPACDNAAlphabet

New features and improvements:

  • Alignments may now handle different costs for insert and delete gaps
  • ListResults may now be constructed from Collections of ResultSets
  • Several minor improvements and bugfixes in many classes
  • Improvements of documentation of several classes

Logo LSTM for biological sequence analysis 1.0

by mhex - July 28, 2010, 16:32:29 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 9826 views, 2304 downloads, 1 subscription

Rating Whole StarWhole StarWhole StarWhole StarWhole Star
(based on 1 vote)

About: Implementation of LSTM for biological sequence analysis (classification, regression, motif discovery, remote homology detection). Additionally a LSTM as logistic regression with spectrum kernel is included.

Changes:

Spectrum LSTM package included