Projects that are tagged with markov random fields.


Logo JMLR Jstacs 2.3

by keili - September 13, 2017, 14:25:38 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 30083 views, 6893 downloads, 4 subscriptions

About: A Java framework for statistical analysis and classification of biological sequences

Changes:

New classes and packages:

  • Jstacs 2.3 is the first release to be accompanied by JstacsFX, a library for building JavaFX-based graphical user interfaces based on JstacsTools
  • new interface MultiThreadedFunction
  • new class LargeSequenceReader for reading large sequence files in chunks
  • new interface QuickScanningSequenceScore
  • new class RegExpValidator for checking String inputs against a regular expression
  • new class IUPACDNAAlphabet

New features and improvements:

  • Alignments may now handle different costs for insert and delete gaps
  • ListResults may now be constructed from Collections of ResultSets
  • Several minor improvements and bugfixes in many classes
  • Improvements of documentation of several classes

Logo Libra 1.1.2d

by lowd - February 4, 2016, 08:51:50 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 27443 views, 5691 downloads, 3 subscriptions

About: The Libra Toolkit is a collection of algorithms for learning and inference with discrete probabilistic models, including Bayesian networks, Markov networks, dependency networks, sum-product networks, arithmetic circuits, and mixtures of trees.

Changes:

Version 1.1.2d (12/29/2015):

  • Minor fixes to scripts
  • Published in JMLR ML-OSS!

Logo JMLR libDAI 0.3.2

by jorism - July 17, 2015, 15:59:55 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 59431 views, 11282 downloads, 4 subscriptions

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About: libDAI provides free & open source implementations of various (approximate) inference methods for graphical models with discrete variables, including Bayesian networks and Markov Random Fields.

Changes:

Release 0.3.2 fixes various bugs and adds GLC (Generalized Loop Corrections) written by Siamak Ravanbakhsh.


Logo Chordalysis 1.0

by fpetitjean - March 24, 2014, 01:22:06 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 3601 views, 778 downloads, 1 subscription

About: Log-linear analysis for high-dimensional data

Changes:

Initial Announcement on mloss.org.


Logo JProGraM 13.2

by ninofreno - February 13, 2013, 20:29:38 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 18624 views, 3543 downloads, 1 subscription

About: JProGraM (PRObabilistic GRAphical Models in Java) is a statistical machine learning library. It supports statistical modeling and data analysis along three main directions: (1) probabilistic graphical models (Bayesian networks, Markov random fields, dependency networks, hybrid random fields); (2) parametric, semiparametric, and nonparametric density estimation (Gaussian models, nonparanormal estimators, Parzen windows, Nadaraya-Watson estimator); (3) generative models for random networks (small-world, scale-free, exponential random graphs, Fiedler random graphs/fields), subgraph sampling algorithms (random walk, snowball, etc.), and spectral decomposition.

Changes:

JProGraM 13.2 -- CHANGE LOG

Release date: February 13, 2012

New features: -- Support for Fiedler random graphs/random field models for large-scale networks (ninofreno.graph.fiedler package); -- Various bugfixes and enhancements (especially in the ninofreno.graph and ninofreno.math package).


Logo Graphical Models and Conditional Random Fields Toolbox 2

by jdomke - January 5, 2012, 15:38:20 CET [ Project Homepage BibTeX Download ] 4920 views, 1110 downloads, 1 subscription

About: This is a Matlab/C++ "toolbox" of code for learning and inference with graphical models. It is focused on parameter learning using marginalization in the high-treewidth setting.

Changes:

Initial Announcement on mloss.org.


About: OpenGM is a free C++ template library, a command line tool and a set of MATLAB functions for optimization in higher order graphical models. Graphical models of any order and structure can be built either in C++ or in MATLAB, using simple and intuitive commands. These models can be stored in HDF5 files and subjected to state-of-the-art optimization algorithms via the OpenGM command line optimizer. All library functions can also be called directly from C++ code. OpenGM realizes the Inference Algorithm Interface (IAI), a concept that makes it easy for programmers to use their own algorithms and factor classes with OpenGM.

Changes:

Initial Announcement on mloss.org.


Logo JMLR FastInf 1.0

by arielj - June 4, 2010, 14:04:37 CET [ Project Homepage BibTeX Download ] 11911 views, 4230 downloads, 1 subscription

About: The library is focused on implementation of propagation based approximate inference methods. Also implemented are a clique tree based exact inference, Gibbs sampling, and the mean field algorithm.

Changes:

Initial Announcement on mloss.org.


About: This toolbox provides functions for maximizing and minimizing submodular set functions, with applications to Bayesian experimental design, inference in Markov Random Fields, clustering and others.

Changes:
  • Modified specification of optional parameters (using sfo_opt)
  • Added sfo_ls_lazy for maximizing nonnegative submodular functions
  • Added sfo_fn_infogain, sfo_fn_lincomb, sfo_fn_invert, ...
  • Added additional documentation and more examples
  • Now Octave ready

About: GMRFLib is a library in C for fast and exact simulation of Gaussian Markov Random Fields (GMRF) on graphs.unconditional simulation of a GMRF, conditional simulation from a GMRF

Changes:

Initial Announcement on mloss.org.