Projects that are tagged with markov random fields.

Logo JMLR Jstacs 2.3

by keili - September 13, 2017, 14:25:38 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 34910 views, 8002 downloads, 4 subscriptions

About: A Java framework for statistical analysis and classification of biological sequences


New classes and packages:

  • Jstacs 2.3 is the first release to be accompanied by JstacsFX, a library for building JavaFX-based graphical user interfaces based on JstacsTools
  • new interface MultiThreadedFunction
  • new class LargeSequenceReader for reading large sequence files in chunks
  • new interface QuickScanningSequenceScore
  • new class RegExpValidator for checking String inputs against a regular expression
  • new class IUPACDNAAlphabet

New features and improvements:

  • Alignments may now handle different costs for insert and delete gaps
  • ListResults may now be constructed from Collections of ResultSets
  • Several minor improvements and bugfixes in many classes
  • Improvements of documentation of several classes

Logo Libra 1.1.2d

by lowd - February 4, 2016, 08:51:50 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 30675 views, 6333 downloads, 3 subscriptions

About: The Libra Toolkit is a collection of algorithms for learning and inference with discrete probabilistic models, including Bayesian networks, Markov networks, dependency networks, sum-product networks, arithmetic circuits, and mixtures of trees.


Version 1.1.2d (12/29/2015):

  • Minor fixes to scripts
  • Published in JMLR ML-OSS!

Logo JMLR libDAI 0.3.2

by jorism - July 17, 2015, 15:59:55 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 64469 views, 12399 downloads, 4 subscriptions

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About: libDAI provides free & open source implementations of various (approximate) inference methods for graphical models with discrete variables, including Bayesian networks and Markov Random Fields.


Release 0.3.2 fixes various bugs and adds GLC (Generalized Loop Corrections) written by Siamak Ravanbakhsh.

Logo Chordalysis 1.0

by fpetitjean - March 24, 2014, 01:22:06 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 3975 views, 840 downloads, 1 subscription

About: Log-linear analysis for high-dimensional data


Initial Announcement on

Logo JProGraM 13.2

by ninofreno - February 13, 2013, 20:29:38 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 20183 views, 3768 downloads, 1 subscription

About: JProGraM (PRObabilistic GRAphical Models in Java) is a statistical machine learning library. It supports statistical modeling and data analysis along three main directions: (1) probabilistic graphical models (Bayesian networks, Markov random fields, dependency networks, hybrid random fields); (2) parametric, semiparametric, and nonparametric density estimation (Gaussian models, nonparanormal estimators, Parzen windows, Nadaraya-Watson estimator); (3) generative models for random networks (small-world, scale-free, exponential random graphs, Fiedler random graphs/fields), subgraph sampling algorithms (random walk, snowball, etc.), and spectral decomposition.


JProGraM 13.2 -- CHANGE LOG

Release date: February 13, 2012

New features: -- Support for Fiedler random graphs/random field models for large-scale networks (ninofreno.graph.fiedler package); -- Various bugfixes and enhancements (especially in the ninofreno.graph and ninofreno.math package).

Logo Graphical Models and Conditional Random Fields Toolbox 2

by jdomke - January 5, 2012, 15:38:20 CET [ Project Homepage BibTeX Download ] 5395 views, 1172 downloads, 1 subscription

About: This is a Matlab/C++ "toolbox" of code for learning and inference with graphical models. It is focused on parameter learning using marginalization in the high-treewidth setting.


Initial Announcement on

About: OpenGM is a free C++ template library, a command line tool and a set of MATLAB functions for optimization in higher order graphical models. Graphical models of any order and structure can be built either in C++ or in MATLAB, using simple and intuitive commands. These models can be stored in HDF5 files and subjected to state-of-the-art optimization algorithms via the OpenGM command line optimizer. All library functions can also be called directly from C++ code. OpenGM realizes the Inference Algorithm Interface (IAI), a concept that makes it easy for programmers to use their own algorithms and factor classes with OpenGM.


Initial Announcement on

Logo JMLR FastInf 1.0

by arielj - June 4, 2010, 14:04:37 CET [ Project Homepage BibTeX Download ] 12845 views, 4678 downloads, 1 subscription

About: The library is focused on implementation of propagation based approximate inference methods. Also implemented are a clique tree based exact inference, Gibbs sampling, and the mean field algorithm.


Initial Announcement on

About: This toolbox provides functions for maximizing and minimizing submodular set functions, with applications to Bayesian experimental design, inference in Markov Random Fields, clustering and others.

  • Modified specification of optional parameters (using sfo_opt)
  • Added sfo_ls_lazy for maximizing nonnegative submodular functions
  • Added sfo_fn_infogain, sfo_fn_lincomb, sfo_fn_invert, ...
  • Added additional documentation and more examples
  • Now Octave ready

About: GMRFLib is a library in C for fast and exact simulation of Gaussian Markov Random Fields (GMRF) on graphs.unconditional simulation of a GMRF, conditional simulation from a GMRF


Initial Announcement on