Projects that are tagged with java.

Logo DIANNE 0.5.0

by sbohez - October 25, 2016, 19:51:07 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 64 views, 6 downloads, 1 subscription

About: DIANNE is a modular software framework for designing, training and evaluating artificial neural networks on heterogeneous, distributed infrastructure . It is built on top of OSGi and AIOLOS and can transparently deploy and redeploy (parts of) a neural network on multiple machines, as well as scale up training on a compute cluster.


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Logo JMLR JKernelMachines 3.0

by dpicard - May 4, 2016, 17:53:28 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 32089 views, 6951 downloads, 4 subscriptions

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About: machine learning library in java for easy development of new kernels and kernel algorithms


Version 3.0

/! Warning: this version is incompatible with previous code

  • change license to BSD 3-clauses
  • change package name to net.jkernelmachines
  • change to maven build system (available through central)
  • online training interfaces to allow continuous online learning
  • add a new budget oriented kernel classifier
  • new kernel and processing especially for strings

Logo Java Statistical Analysis Tool 0.0.4

by EdwardRaff - March 5, 2016, 06:28:14 CET [ Project Homepage BibTeX Download ] 1277 views, 362 downloads, 2 subscriptions

About: General purpose Java Machine Learning library for classification, regression, and clustering.


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Logo JMLR Jstacs 2.2

by keili - February 17, 2016, 11:57:56 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 24446 views, 5629 downloads, 3 subscriptions

About: A Java framework for statistical analysis and classification of biological sequences


New classes and packages:

  • CorreationCoefficient: PerformanceMeasure
  • de.jstacs.clustering: package with classes for hierarchical clustering
  • DeBruijnGraphSequenceGenerator and DeBruijnSequenceGenerator for generating De Buijn sequences
  • CyclicSequenceAdaptor for representing cyclic sequences
  • PlotGeneratorResult for representing results that plot images to a Graphics2D object
  • TextResult for results that may be stored as text files
  • package de.jstacs.results.savers for generic classes that store results to disk
  • LimitedSparseLocalInhomogeneousMixtureDiffSM_higherOrder for sparse local inhomogeneous mixture (Slim) models
  • PFMWrapperTrainSM for representing position frequency matrices and position weight matrices from databases
  • package with classes for generic Jstacs tools that may be used in different user interfaces (command line, Galaxy, JavaFX)
  • Compression for ZIP compression of Strings
  • package with generic GraphicsAdaptor using Apache XML commons
  • projects: Dimont, GeMoMa, Slim, TALEN, motif comparison

New features and improvements:

  • Major restructuring of Alignment for better efficiency
  • Alignment Costs and StringAlignment now Storable
  • New constructor of DataSet allowing a specified percentage of sequences to mismatch the given alphabet
  • BioJavaAdapter ported to BioJava 1.9
  • XMLParser now also allows for storing Sequences
  • New method for parsing HMMer profile HMMs in HMMFactory
  • Several minor improvements and bugfixes in many classes
  • Improvements of documentation of several classes

Logo Universal Java Matrix Package 0.3.0

by arndt - July 31, 2015, 14:23:14 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 14473 views, 2747 downloads, 3 subscriptions

About: The Universal Java Matrix Package (UJMP) is a data processing tool for Java. Unlike JAMA and Colt, it supports multi-threading and is therefore much faster on current hardware. It does not only support matrices with double values, but instead handles every type of data as a matrix through a common interface, e.g. CSV files, Excel files, images, WAVE audio files, tables in SQL data bases, and much more.


Updated to version 0.3.0

About: Learns dynamic network changes across conditions and visualize the results in Cytoscape.


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Logo JEMLA 1.0

by bathaeian - January 4, 2015, 08:34:49 CET [ Project Homepage BibTeX Download ] 1834 views, 567 downloads, 3 subscriptions

About: Java package for calculating Entropy for Machine Learning Applications. It has implemented several methods of handling missing values. So it can be used as a lab for examining missing values.


Discretizing numerical values is added to calculate mode of values and fractional replacement of missing ones. class diagram is on the web

Logo Java deep neural networks with GPU 0.2.0-alpha

by hok - May 10, 2014, 14:22:30 CET [ Project Homepage BibTeX Download ] 3813 views, 814 downloads, 2 subscriptions

About: GPU-accelerated java deep neural networks


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Logo Java Optimized Processor for Embedded Machine Learning 1

by rasped - December 15, 2009, 12:51:26 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 5947 views, 1219 downloads, 1 subscription

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About: JOP is a Java virtual machine implemented in hardware. It is a hard real-time open source multicore processor capable of worst case execution time analysis of Java code.


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