Projects that are tagged with graph kernels.

Logo KeLP 2.0.0

by kelpadmin - November 26, 2015, 16:14:53 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 3896 views, 974 downloads, 3 subscriptions

About: Kernel-based Learning Platform (KeLP) is Java framework that supports the implementation of kernel-based learning algorithms, as well as an agile definition of kernel functions over generic data representation, e.g. vectorial data or discrete structures. The framework has been designed to decouple kernel functions and learning algorithms, through the definition of specific interfaces. Once a new kernel function has been implemented, it can be automatically adopted in all the available kernel-machine algorithms. KeLP includes different Online and Batch Learning algorithms for Classification, Regression and Clustering, as well as several Kernel functions, ranging from vector-based to structural kernels. It allows to build complex kernel machine based systems, leveraging on JSON/XML interfaces to instantiate classifiers without writing a single line of code.


This is a major release that includes brand new features as well as a renewed architecture of the entire project.

Now KeLP is organized in four maven projects:

  • kelp-core: it contains the infrastructure of abstract classes and interfaces to work with KeLP. Furthermore, some implementations of algorithms, kernels and representations are included, to provide a base operative environment.

  • kelp-additional-kernels: it contains several kernel functions that extend the set of kernels made available in the kelp-core project. Moreover, this project implements the specific representations required to enable the application of such kernels. In this project the following kernel functions are considered: Sequence kernels, Tree kernels and Graphs kernels.

  • kelp-additional-algorithms: it contains several learning algorithms extending the set of algorithms provided in the kelp-core project, e.g. the C-Support Vector Machine or ν-Support Vector Machine learning algorithms. In particular, advanced learning algorithms for classification and regression can be found in this package. The algorithms are grouped in: 1) Batch Learning, where the complete training dataset is supposed to be entirely available during the learning phase; 2) Online Learning, where individual examples are exploited one at a time to incrementally acquire the model.

  • kelp-full: this is the complete package of KeLP. It aggregates the previous modules in one jar. It contains also a set of fully functioning examples showing how to implement a learning system with KeLP. Batch learning algorithm as well as Online Learning algorithms usage is shown here. Different examples cover the usage of standard kernel, Tree Kernels and Sequence Kernel, with caching mechanisms.

Furthermore this new release includes:

  • CsvDatasetReader: it allows to read files in CSV format

  • DCDLearningAlgorithm: it is the implementation of the Dual Coordinate Descent learning algorithm

  • methods for checking the consistency of a dataset.

Check out this new version from our repositories. API Javadoc is already available. Your suggestions will be very precious for us, so download and try KeLP 2.0.0!

Logo Rchemcpp 1.99.0

by klambaue - September 10, 2013, 09:10:13 CET [ Project Homepage BibTeX Download ] 4507 views, 1164 downloads, 1 subscription

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About: The Rchemcpp package implements the marginalized graph kernel and extensions, Tanimoto kernels, graph kernels, pharmacophore and 3D kernels suggested for measuring the similarity of molecules.


Moved from CRAN to Bioconductor. Improved handling of molecules, visualization and examples.

Logo ChemCpp 1.0.2

by pmahe - November 28, 2007, 21:47:44 CET [ Project Homepage BibTeX Download ] 5038 views, 1895 downloads, 0 subscriptions

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About: ChemCpp is a C++ toolbox for chemoinformatics focusing on the computation of kernel functions between chemical compounds.


Initial Announcement on