Projects that are tagged with classification.
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Logo Apache Mahout 0.8

by gsingers - July 27, 2013, 15:52:32 CET [ Project Homepage BibTeX Download ] 16483 views, 4495 downloads, 2 subscriptions

About: Apache Mahout is an Apache Software Foundation project with the goal of creating both a community of users and a scalable, Java-based framework consisting of many machine learning algorithm [...]

Changes:

Apache Mahout 0.8 contains, amongst a variety of performance improvements and bug fixes, an implementation of Streaming K-Means, deeper Lucene/Solr integration and new scalable recommender algorithms. For a full description of the newest release, see http://mahout.apache.org/.


Logo JMLR Jstacs 2.1

by keili - June 3, 2013, 07:32:55 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 15705 views, 3777 downloads, 2 subscriptions

About: A Java framework for statistical analysis and classification of biological sequences

Changes:

New classes:

  • MultipleIterationsCondition: Requires another TerminationCondition to fail a contiguous, specified number of times
  • ClassifierFactory: Allows for creating standard classifiers
  • SeqLogoPlotter: Plot PNG sequence logos from within Jstacs
  • MultivariateGaussianEmission: Multivariate Gaussian emission density for a Hidden Markov Model
  • MEManager: Maximum entropy model

New features and improvements:

  • Alignment: Added free shift alignment
  • PerformanceMeasure and sub-classes: Extension to weighted test data
  • AbstractClassifier, ClassifierAssessment and sub-classes: Adaption to weighted PerformanceMeasures
  • DNAAlphabet: Parser speed-up
  • PFMComparator: Extension to PFM from other sources/databases
  • ToolBox: New convenience methods for computing several statistics (e.g., median, correlation)
  • SignificantMotifOccurrencesFinder: New methods for computing PWMs and statistics from predictions
  • SequenceScore and sub-classes: New method toString(NumberFormat)
  • DataSet: Adaption to weighted data, e.g., partitioning
  • REnvironment: Changed several methods from String to CharSequence

Restructuring:

  • changed MultiDimensionalSequenceWrapperDiffSM to MultiDimensionalSequenceWrapperDiffSS

Several minor new features, bug fixes, and code cleanups


Logo Cognitive Foundry 3.3.3

by Baz - May 21, 2013, 05:59:37 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 17952 views, 2880 downloads, 2 subscriptions

About: The Cognitive Foundry is a modular Java software library of machine learning components and algorithms designed for research and applications.

Changes:
  • General:
    • Made code able to compile under both Java 1.6 and 1.7. This required removing some potentially unsafe methods that used varargs with generics.
    • Upgraded XStream dependency to 1.4.4.
    • Improved support for regression algorithms in learning.
    • Added general-purpose adapters to make it easier to compose learning algorithms and adapt their input or output.
  • Common Core:
    • Added isSparse, toArray, dotDivide, and dotDivideEquals methods for Vector and Matrix.
    • Added scaledPlus, scaledPlusEquals, scaledMinus, and scaledMinusEquals to Ring (and thus Vector and Matrix) for potentially faster such operations.
    • Fixed issue where matrix and dense vector equals was not checking for equal dimensionality.
    • Added transform, transformEquals, tranformNonZeros, and transformNonZerosEquals to Vector.
    • Made LogNumber into a signed version of a log number and moved the prior unsigned implementation into UnsignedLogNumber.
    • Added EuclideanRing interface that provides methods for times, timesEquals, divide, and divideEquals. Also added Field interface that provides methods for inverse and inverseEquals. These interfaces are now implemented by the appropriate number classes such as ComplexNumber, MutableInteger, MutableLong, MutableDouble, LogNumber, and UnsignedLogNumber.
    • Added interface for Indexer and DefaultIndexer implementation for creating a zero-based indexing of values.
    • Added interfaces for MatrixFactoryContainer and DivergenceFunctionContainer.
    • Added ReversibleEvaluator, which various identity functions implement as well as a new utility class ForwardReverseEvaluatorPair to create a reversible evaluator from a pair of other evaluators.
    • Added method to create an ArrayList from a pair of values in CollectionUtil.
    • ArgumentChecker now properly throws assertion errors for NaN values. Also added checks for long types.
    • Fixed handling of Infinity in subtraction for LogMath.
    • Fixed issue with angle method that would cause a NaN if cosine had a rounding error.
    • Added new createMatrix methods to MatrixFactory that initializes the Matrix with the given value.
    • Added copy, reverse, and isEmpty methods for several array types to ArrayUtil.
    • Added utility methods for creating a HashMap, LinkedHashMap, HashSet, or LinkedHashSet with an expected size to CollectionUtil.
    • Added getFirst and getLast methods for List types to CollectionUtil.
    • Removed some calls to System.out and Exception.printStackTrace.
  • Common Data:
    • Added create method for IdentityDataConverter.
    • ReversibleDataConverter now is an extension of ReversibleEvaluator.
  • Learning Core:
    • Added general learner transformation capability to make it easier to adapt and compose algorithms. InputOutputTransformedBatchLearner provides this capability for supervised learning algorithms by composing together a triplet. CompositeBatchLearnerPair does it for a pair of algorithms.
    • Added a constant and identity learners.
    • Added Chebyshev, Identity, and Minkowski distance metrics.
    • Added methods to DatasetUtil to get the output values for a dataset and to compute the sum of weights.
    • Made generics more permissive for supervised cost functions.
    • Added ClusterDistanceEvaluator for taking a clustering that encodes the distance from an input value to all clusters and returns the result as a vector.
    • Fixed potential round-off issue in decision tree splitter.
    • Added random subspace technique, implemented in RandomSubspace.
    • Separated functionality from LinearFunction into IdentityScalarFunction. LinearFunction by default is the same, but has parameters that can change the slope and offset of the function.
    • Default squashing function for GeneralizedLinearModel and DifferentiableGeneralizedLinearModel is now a linear function instead of an atan function.
    • Added a weighted estimator for the Poisson distribution.
    • Added Regressor interface for evaluators that are the output of (single-output) regression learning algorithms. Existing such evaluators have been updated to implement this interface.
    • Added support for regression ensembles including additive and averaging ensembles with and without weights. Added a learner for regression bagging in BaggingRegressionLearner.
    • Added a simple univariate regression class in UnivariateLinearRegression.
    • MultivariateDecorrelator now is a VectorInputEvaluator and VectorOutputEvaluator.
    • Added bias term to PrimalEstimatedSubGradient.
  • Text Core:
    • Fixed issue with the start position for tokens from LetterNumberTokenizer being off by one except for the first one.

Logo MLDemos 0.5.1

by basilio - March 2, 2013, 16:06:13 CET [ Project Homepage BibTeX Download ] 20227 views, 4772 downloads, 2 subscriptions

About: MLDemos is a user-friendly visualization interface for various machine learning algorithms for classification, regression, clustering, projection, dynamical systems, reward maximisation and reinforcement learning.

Changes:

New Visualization and Dataset Features Added 3D visualization of samples and classification, regression and maximization results Added Visualization panel with individual plots, correlations, density, etc. Added Editing tools to drag/magnet data, change class, increase or decrease dimensions of the dataset Added categorical dimensions (indexed dimensions with non-numerical values) Added Dataset Editing panel to swap, delete and rename dimensions, classes or categorical values Several bug-fixes for display, import/export of data, classification performance

New Algorithms and methodologies Added Projections to pre-process data (which can then be classified/regressed/clustered), with LDA, PCA, KernelPCA, ICA, CCA Added Grid-Search panel for batch-testing ranges of values for up to two parameters at a time Added One-vs-All multi-class classification for non-multi-class algorithms Trained models can now be kept and tested on new data (training on one dataset, testing on another) Added a dataset generator panel for standard toy datasets (e.g. swissroll, checkerboard,...) Added a number of clustering, regression and classification algorithms (FLAME, DBSCAN, LOWESS, CCA, KMEANS++, GP Classification, Random Forests) Added Save/Load Model option for GMMs and SVMs Added Growing Hierarchical Self Organizing Maps (original code by Michael Dittenbach) Added Automatic Relevance Determination for SVM with RBF kernel (Thanks to Ashwini Shukla!)


Logo Orange 2.6

by janez - February 14, 2013, 18:15:08 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 12824 views, 2459 downloads, 1 subscription

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About: Orange is a component-based machine learning and data mining software. It includes a friendly yet powerful and flexible graphical user interface for visual programming. For more advanced use(r)s, [...]

Changes:

The core of the system (except the GUI) no longer includes any GPL code and can be licensed under the terms of BSD upon request. The graphical part remains under GPL.

Changed the BibTeX reference to the paper recently published in JMLR MLOSS.


Logo UniverSVM 1.22

by fabee - October 16, 2012, 11:24:12 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 19181 views, 2802 downloads, 0 subscriptions

About: The UniverSVM is a SVM implementation written in C/C++. Its functionality comprises large scale transduction via CCCP optimization, sparse solutions via CCCP optimization and data-dependent [...]

Changes:

Minor changes: fix bug on set_alphas_b0 function (thanks to Ferdinand Kaiser - ferdinand.kaiser@tut.fi)


Logo Linear SVM with general regularization 1.0

by rflamary - October 5, 2012, 15:34:21 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 2881 views, 816 downloads, 1 subscription

About: This package is an implementation of a linear svm solver with a wide class of regularizations on the svm weight vector (l1, l2, mixed norm l1-lq, adaptive lasso). We provide solvers for the classical single task svm problem and for multi-task with joint feature selection or similarity promoting term.

Changes:

Initial Announcement on mloss.org.


Logo MLWizard 5.2

by remat - July 26, 2012, 15:04:14 CET [ Project Homepage BibTeX Download ] 3229 views, 820 downloads, 1 subscription

About: MLwizard recommends and optimizes classification algorithms based on meta-learning and is a software wizard fully integrated into RapidMiner but can be used as library as well.

Changes:

Faster parameter optimization using genetic algorithm with predefined start population.


Logo MLFlex 02-21-2012-00-12

by srp33 - April 3, 2012, 16:44:43 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 2309 views, 500 downloads, 1 subscription

About: Motivated by a need to classify high-dimensional, heterogeneous data from the bioinformatics domain, we developed ML-Flex, a machine-learning toolbox that enables users to perform two-class and multi-class classification analyses in a systematic yet flexible manner. ML-Flex was written in Java but is capable of interfacing with third-party packages written in other programming languages. It can handle multiple input-data formats and supports a variety of customizations. MLFlex provides implementations of various validation strategies, which can be executed in parallel across multiple computing cores, processors, and nodes. Additionally, ML-Flex supports aggregating evidence across multiple algorithms and data sets via ensemble learning. (See http://jmlr.csail.mit.edu/papers/volume13/piccolo12a/piccolo12a.pdf.)

Changes:

Initial Announcement on mloss.org.


Logo Sparse MultiTask Learning Toolbox 1.2

by rflamary - March 18, 2012, 11:31:00 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 3429 views, 824 downloads, 1 subscription

About: This package is a set of Matlab scripts that implements the algorithms described in the submitted paper: "Lp-Lq Sparse Linear and Sparse Multiple Kernel MultiTask Learning".

Changes:

Initial Announcement on mloss.org.


Logo MLPY Machine Learning Py 3.5.0

by albanese - March 15, 2012, 09:52:41 CET [ Project Homepage BibTeX Download ] 54065 views, 10325 downloads, 2 subscriptions

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About: mlpy is a Python module for Machine Learning built on top of NumPy/SciPy and of GSL.

Changes:

New features:

  • LibSvm(): pred_probability() now returns probability estimates; pred_values() added
  • LibLinear(): pred_values() and pred_probability() added
  • dtw_std: squared Euclidean option added
  • LCS for series composed by real values (lcs_real()) added
  • Documentation

Fix:

  • wavelet submodule: cwt(): it returned only real values in morlet and poul
  • IRelief(): remove np. in learn()
  • fix rfe_kfda and rfe_w2 when p=1

Logo Large margin filtering 0.9

by rflamary - February 18, 2012, 15:50:43 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 2912 views, 640 downloads, 1 subscription

About: Matlab SVM toolbox for learning large margin filters in signal or images.

Changes:

Initial Announcement on mloss.org.


Logo BCILAB 1.0-beta

by chkothe - January 6, 2012, 23:47:55 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 3821 views, 760 downloads, 1 subscription

About: MATLAB toolbox for advanced Brain-Computer Interface (BCI) research.

Changes:

Initial Announcement on mloss.org.


Logo Kernel Machine Library 0.2

by pawelm - December 27, 2011, 17:14:01 CET [ Project Homepage BibTeX BibTeX for corresponding Paper ] 3928 views, 157 downloads, 1 subscription

About: The Kernel-Machine Library is a free (released under the LGPL) C++ library to promote the use of and progress of kernel machines.

Changes:

Updated mloss entry (minor fixes).


Logo PyMVPA Multivariate Pattern Analysis in Python 2.0.0

by yarikoptic - December 22, 2011, 01:36:32 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 31169 views, 5670 downloads, 1 subscription

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About: Python module to ease pattern classification analyses of large datasets. It provides high-level abstraction of typical processing steps (e.g. data preparation, classification, feature selection, [...]

Changes:
  • 2.0.0 (Mon, Dec 19 2011)

This release aggregates all the changes occurred between official releases in 0.4 series and various snapshot releases (in 0.5 and 0.6 series). To get better overview of high level changes see :ref:release notes for 0.5 <chap_release_notes_0.5> and :ref:0.6 <chap_release_notes_0.6> as well as summaries of release candidates below

  • Fixes (23 BF commits)

    • significance level in the right tail was fixed to include the value tested -- otherwise resulted in optimistic bias (or absurdly high significance in improbable case if all estimates having the same value)
    • compatible with the upcoming IPython 0.12 and renamed sklearn (Fixes #57)
    • do not double-train slave classifiers while assessing sensitivities (Fixes #53)
  • Enhancements (30 ENH + 3 NF commits)

    • resolving voting ties in kNN based on mean distance, and randomly in SMLR
    • :class:kNN's ca.estimates now contains dictionaries with votes for each class
    • consistent zscoring in :class:Hyperalignment
  • 2.0.0~rc5 (Wed, Oct 19 2011)

  • Major: to allow easy co-existence of stable PyMVPA 0.4.x, 0.6 development mvpa module was renamed into mod:mvpa2.

  • Fixes

    • compatible with the new Shogun 1.x series
    • compatible with the new h5py 2.x series
    • mvpa-prep-fmri -- various compatibility fixes and smoke testing
    • deepcopying :class:SummaryStatistics during add
  • Enhancements

    • tutorial uses :mod:mvpa2.tutorial_suite now
    • better suppression of R warnings when needed
    • internal attributes of many classes were exposed as properties
    • more unification of __repr__ for many classes
  • 0.6.0~rc4 (Wed, Jun 14 2011)

  • Fixes

    • Finished transition to :mod:nibabel conventions in plot_lightbox
    • Addressed :mod:matplotlib.hist API change
    • Various adjustments in the tests batteries (:mod:nibabel 1.1.0 compatibility, etc)
  • New functionality

    • Explicit new argument flatten to from_wizard -- default behavior changed if mapper was provided as well
  • Enhancements

    • Elaborated __str__ and __repr__ for some Classifiers and Measures
  • 0.6.0~rc3 (Thu, Apr 12 2011)

  • Fixes

    • Bugfixes regarding the interaction of FlattenMapper and BoxcarMapper that affected event-related analyses.
    • Splitter now handles attribute value None for splitting properly.
    • GNBSearchlight handling of
      roi_ids.
    • More robust detection of mod:scikits.learn and :mod:nipy externals.
  • New functionality

    • Added a Repeater node to yield a dataset multiple times and
      Sifter node to exclude some datasets. Consequently, the "nosplitting" mode of Splitter got removed at the same time.
    • :file:tools/niils -- little tool to list details (dimensionality, scaling, etc) of the files in nibabel-supported formats.
  • Enhancements

    • Numerous documentation fixes.
    • Various improvements and increased flexibility of null distribution estimation of Measures.
    • All attribute are now reported in sorted order when printing a dataset.
    • fmri_dataset now also stores the input image type.
    • Crossvalidation can now take a custom Splitter instance. Moreover, the default splitter of CrossValidation is more robust in terms of number and type of created splits for common usage patterns (i.e. together with partitioners).
    • CrossValidation takes any custom Node as errorfx argument.
    • ConfusionMatrix can now be used as an errorfx in Crossvalidation.
    • LOE(ACC): Linear Order Effect in ACC was added to
      ConfusionMatrix to detect trends in performances across splits.
    • A Node s postproc is now accessible as a property.
    • RepeatedMeasure has a new 'concat_as' argument that allows results to be concatenated along the feature axis. The default behavior, stacking as multiple samples, is unchanged.
    • Searchlight now has the ability to mark the center/seed of an ROI in with a feature attribute in the generated datasets.
    • debug takes args parameter for delayed string comprehensions. It should reduce run-time impact of debug() calls in regular, non -O mode of Python operation.
    • String summaries and representations (provided by __str__ and __repr__) were made more exhaustive and more coherent. Additional properties to access initial constructor arguments were added to variety of classes.
  • Internal changes

    • New debug target STDOUT to allow attaching metrics (e.g. traceback, timestamps) to regular output printed to stdout

    • New set of decorators to help with unittests

    • @nodebug to disable specific debug targets for the duration of the test.

    • @reseed_rng to guarantee consistent random data given initial seeding.

    • @with_tempfile to provide a tempfile name which would get removed upon completion (test success or failure)

    • Dropping daily testing of maint/0.5 branch -- RIP.

    • Collection s were provided with adequate (deep|)copy. And Dataset was refactored to use Collection s copy method.

    • update-* Makefile rules automatically should fast-forward corresponding website-updates branch

    • MVPA_TESTS_VERBOSITY controls also :mod:numpy warnings now.

    • Dataset.__array__ provides original array instead of copy (unless dtype is provided)

Also adapts changes from 0.4.6 and 0.4.7 (see corresponding changelogs).

  • 0.6.0~rc2 (Thu, Mar 3 2011)

  • Various fixes in the mvpa.atlas module.

  • 0.6.0~rc1 (Thu, Feb 24 2011)

  • Many, many, many

  • For an overview of the most drastic changes :ref:see constantly evolving release notes for 0.6 <chap_release_notes_0.6>

  • 0.5.0 (sometime in March 2010)

This is a special release, because it has never seen the general public. A summary of fundamental changes introduced in this development version can be seen in the :ref:release notes <chap_release_notes_0.5>.

Most notably, this version was to first to come with a comprehensive two-day workshop/tutorial.

  • 0.4.7 (Tue, Mar 07 2011) (Total: 12 commits)

A bugfix release

  • Fixed

    • Addressed the issue with input NIfTI files having scl_ fields set: it could result in incorrect analyses and map2nifti-produced NIfTI files. Now input files account for scaling/offset if scl_ fields direct to do so. Moreover upon map2nifti, those fields get reset.
    • :file:doc/examples/searchlight_minimal.py - best error is the minimal one
  • Enhancements

    • :class:~mvpa.clfs.gnb.GNB can now tolerate training datasets with a single label
    • :class:~mvpa.clfs.meta.TreeClassifier can have trailing nodes with no classifier assigned
  • 0.4.6 (Tue, Feb 01 2011) (Total: 20 commits)

A bugfix release

  • Fixed (few BF commits):

    • Compatibility with numpy 1.5.1 (histogram) and scipy 0.8.0 (workaround for a regression in legendre)
    • Compatibility with libsvm 3.0
    • :class:~mvpa.clfs.plr.PLR robustification
  • Enhancements

    • Enforce suppression of numpy warnings while running unittests. Also setting verbosity >= 3 enables all warnings (Python, NumPy, and PyMVPA)
    • :file:doc/examples/nested_cv.py example (adopted from 0.5)
    • Introduced base class :class:~mvpa.clfs.base.LearnerError for classifiers' exceptions (adopted from 0.5)
    • Adjusted example data to live upto nibabel's warranty of NIfTI standard-compliance
    • More robust operation of MC iterations -- skip iterations where classifier experienced difficulties and raise an exception (e.g. due to degenerate data)

Logo Random Forests 5.1

by zenog - September 21, 2011, 14:14:17 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 2898 views, 530 downloads, 1 subscription

About: The original Random Forests implementation by Breiman and Cutler.

Changes:

Initial Announcement on mloss.org.


Logo C5.0 2.07

by zenog - September 2, 2011, 14:49:04 CET [ Project Homepage BibTeX Download ] 2814 views, 711 downloads, 1 subscription

About: C5.0 is the successor of the C4.5 decision tree algorithm/tool. In particular, it is faster and more memory-efficient.

Changes:

Initial Announcement on mloss.org.


About: Matlab implementation of variational gaussian approximate inference for Bayesian Generalized Linear Models.

Changes:

Code restructure and bug fix.


Logo Pyriel 1.5

by tfawcett - October 27, 2010, 09:12:53 CET [ BibTeX BibTeX for corresponding Paper Download ] 11867 views, 2582 downloads, 1 subscription

About: Pyriel is a Python system for learning classification rules from data. Unlike other rule learning systems, it is designed to learn rule lists that maximize the area under the ROC curve (AUC) instead of accuracy. Pyriel is mostly an experimental research tool, but it's robust and fast enough to be used for lightweight industrial data mining.

Changes:

1.5 Changed CF (confidence factor) to do LaPlace smoothing of estimates. New flag "--score-for-class C" causes scores to be computed relative to a given (positive) class. For two-class problems. Fixed bug in example sampling code (--sample n) Fixed bug keeping old-style example formats (terminated by dot) from working. More code restructuring.


Logo KeplerWeka 20101008

by fracpete - October 9, 2010, 05:27:13 CET [ Project Homepage BibTeX Download ] 9859 views, 3322 downloads, 1 subscription

About: KeplerWeka represents the integration of all the functionality of the WEKA Machine Learning Workbench into the open-source scientific workflow Kepler. Among them are classification, [...]

Changes:
  • Now compatible with Kepler 2.0
  • New version of WEKA included (patched 3.7.2 release), WEKA's new package manager works in conjunction with Kepler
  • Renamed actor Count to ConditionalTee, introduced new Count actor
  • Removed actors OutputLogger, MultiSync, TwinSync

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