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Logo ROCCH 2.2

by tfawcett - January 9, 2010, 07:47:47 CET [ BibTeX BibTeX for corresponding Paper Download ] 3333 views, 1046 downloads, 0 comments, 1 subscription

About: Given many points in ROC (Receiver Operator Characteristics) space, computes the convex hull.

Changes:

Initial Announcement on mloss.org.


Logo sofia ml 0.1

by dsculley - December 29, 2009, 23:30:58 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 6268 views, 1108 downloads, 0 comments, 1 subscription

About: A fast implementation of several stochastic gradient descent learners for classification, ranking, and ROC area optimization, suitable for large, sparse data sets. Includes Pegasos SVM, SGD-SVM, Passive-Aggressive Perceptron, Perceptron with Margins, Logistic Regression, and ROMMA. Commandline utility and API libraries are provided.

Changes:

Initial Announcement on mloss.org.


Logo svmPRAT 1.0

by rangwala - December 28, 2009, 00:27:03 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 4838 views, 1238 downloads, 1 subscription

About: BACKGROUND:Over the last decade several prediction methods have been developed for determining the structural and functional properties of individual protein residues using sequence and sequence-derived information. Most of these methods are based on support vector machines as they provide accurate and generalizable prediction models. RESULTS:We present a general purpose protein residue annotation toolkit (svmPRAT) to allow biologists to formulate residue-wise prediction problems. svmPRAT formulates the annotation problem as a classification or regression problem using support vector machines. One of the key features of svmPRAT is its ease of use in incorporating any user-provided information in the form of feature matrices. For every residue svmPRAT captures local information around the reside to create fixed length feature vectors. svmPRAT implements accurate and fast kernel functions, and also introduces a flexible window-based encoding scheme that accurately captures signals and pattern for training eective predictive models. CONCLUSIONS:In this work we evaluate svmPRAT on several classification and regression problems including disorder prediction, residue-wise contact order estimation, DNA-binding site prediction, and local structure alphabet prediction. svmPRAT has also been used for the development of state-of-the-art transmembrane helix prediction method called TOPTMH, and secondary structure prediction method called YASSPP. This toolkit developed provides practitioners an efficient and easy-to-use tool for a wide variety of annotation problems. Availability: http://www.cs.gmu.edu/~mlbio/svmprat/

Changes:

Initial Announcement on mloss.org.


About: Matlab code for semi-supervised regression and dimensionality reduction using Hessian energy.

Changes:

Initial Announcement on mloss.org.


Logo r-cran-ROCR 1.0-4

by r-cran-robot - December 8, 2009, 00:00:00 CET [ Project Homepage BibTeX Download ] 6066 views, 1274 downloads, 1 subscription

About: Visualizing the performance of scoring classifiers.

Changes:

Fetched by r-cran-robot on 2013-04-01 00:00:08.344833


Logo SCD 2.1

by ambujtewari - December 3, 2009, 22:21:45 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 8327 views, 1637 downloads, 1 subscription

About: A (randomized) coordinate descent procedure to minimize L1 regularized loss for classification and regression purposes.

Changes:

Fixed some I/O bugs. Lines that ended with whitespace were not read correctly in the previous version.


About: A Java library to create, process and manage mixtures of exponential families.

Changes:

Initial Announcement on mloss.org.


Logo r-cran-RPMM 1.06

by r-cran-robot - November 16, 2009, 00:00:00 CET [ Project Homepage BibTeX Download ] 1460 views, 333 downloads, 0 subscriptions

About: Recursively Partitioned Mixture Model

Changes:

Initial Announcement on mloss.org by r-cran-robot


Logo seqan 1.2

by sonne - November 2, 2009, 14:54:08 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 7894 views, 1521 downloads, 1 subscription

About: SeqAn is an open source C++ library of efficient algorithms and data structures for the analysis of sequences with the focus on biological data.

Changes:
  • 5 more applications, i.e. DFI, MicroRazerS, PairAlign, SeqCons, TreeRecon
  • stable release of RazerS supporting paired-end read mapping and configurable sensitivity
  • new alignment algorithms, e.g. banded, configurable alignments (overlap, semi-global, ...)
  • realignment algorithm
  • NGS data structures and formats, e.g. SAM, Amos, ...
  • new alphabets, e.g. Dna with base call qualities, profile characters
  • auxiliary data structures and algorithms, e.g. double ended queue, command line parser
  • positional scores
  • CMake support

Logo JMLR RL Glue and Codecs -- Glue 3.x and Codecs

by btanner - October 12, 2009, 07:50:03 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 19414 views, 2177 downloads, 1 subscription

About: RL-Glue allows agents, environments, and experiments written in Java, C/C++, Matlab, Python, and Lisp to inter operate, accelerating research by promoting software re-use in the community.

Changes:

RL-Glue paper has been published in JMLR.


Showing Items 491-500 of 609 on page 50 of 61: First Previous 45 46 47 48 49 50 51 52 53 54 55 Next Last