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About: Epistatic miniarray profiles (EMAPs) are a highthroughput approach capable of quantifying aggravating or alleviating genetic interactions between gene pairs. The datasets resulting from EMAP experiments typically take the form of a symmetric pairwise matrix of interaction scores. These datasets have a significant number of missing values  up to 35%  that can reduce the effectiveness of some data analysis techniques and prevent the use of others. This project contains nearest neighbor based tools for the imputation and prediction of these missing values. The code is implemented in Python and uses a nearest neighbor based approach. Two variants are used  a simple weighted nearest neighbors, and a local least squares based regression. Changes:Initial Announcement on mloss.org.

About: OpenGM is a free C++ template library, a command line tool and a set of MATLAB functions for optimization in higher order graphical models. Graphical models of any order and structure can be built either in C++ or in MATLAB, using simple and intuitive commands. These models can be stored in HDF5 files and subjected to stateoftheart optimization algorithms via the OpenGM command line optimizer. All library functions can also be called directly from C++ code. OpenGM realizes the Inference Algorithm Interface (IAI), a concept that makes it easy for programmers to use their own algorithms and factor classes with OpenGM. Changes:Initial Announcement on mloss.org.

About: Variable selection using random forests Changes:Fetched by rcranrobot on 20120201 00:00:12.245883

About: Pyriel is a Python system for learning classification rules from data. Unlike other rule learning systems, it is designed to learn rule lists that maximize the area under the ROC curve (AUC) instead of accuracy. Pyriel is mostly an experimental research tool, but it's robust and fast enough to be used for lightweight industrial data mining. Changes:1.5 Changed CF (confidence factor) to do LaPlace smoothing of estimates. New flag "scoreforclass C" causes scores to be computed relative to a given (positive) class. For twoclass problems. Fixed bug in example sampling code (sample n) Fixed bug keeping oldstyle example formats (terminated by dot) from working. More code restructuring.

About: This Java software implements Profile Hidden Markov Models (PHMMs) for protein classification for the WEKA workbench. Standard PHMMs and newly introduced binary PHMMs are used. In addition the software allows propositionalisation of PHMMs. Changes:description changed

About: A Sortware for All Pairs Similarity Search Changes:Initial Announcement on mloss.org.

About: KeplerWeka represents the integration of all the functionality of the WEKA Machine Learning Workbench into the opensource scientific workflow Kepler. Among them are classification, [...] Changes:

About: Ordinal classification tree functions Changes:Initial Announcement on mloss.org by rcranrobot

About: The SUMO Toolbox is a Matlab toolbox that automatically builds accurate surrogate models (also known as metamodels or response surface models) of a given data source (e.g., simulation code, data set, script, ...) within the accuracy and time constraints set by the user. The toolbox minimizes the number of data points (which it selects automatically) since they are usually expensive. Changes:Incremental update, fixing some cosmetic issues, coincides with JMLR publication.

About: Moses is a statistical machine translation system that allows you to automatically train translation models for any language pair. All you need is a collection of translated texts (parallel corpus). An efficient search algorithm finds quickly the highest probability translation among the exponential number of choices. Changes:Initial Announcement on mloss.org.
