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Logo Epistatic MAP Imputation 1.1

by colm - November 25, 2010, 21:01:10 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 2607 views, 625 downloads, 1 subscription

About: Epistatic miniarray profiles (E-MAPs) are a high-throughput approach capable of quantifying aggravating or alleviating genetic interactions between gene pairs. The datasets resulting from E-MAP experiments typically take the form of a symmetric pairwise matrix of interaction scores. These datasets have a significant number of missing values - up to 35% - that can reduce the effectiveness of some data analysis techniques and prevent the use of others. This project contains nearest neighbor based tools for the imputation and prediction of these missing values. The code is implemented in Python and uses a nearest neighbor based approach. Two variants are used - a simple weighted nearest neighbors, and a local least squares based regression.

Changes:

Initial Announcement on mloss.org.


About: OpenGM is a free C++ template library, a command line tool and a set of MATLAB functions for optimization in higher order graphical models. Graphical models of any order and structure can be built either in C++ or in MATLAB, using simple and intuitive commands. These models can be stored in HDF5 files and subjected to state-of-the-art optimization algorithms via the OpenGM command line optimizer. All library functions can also be called directly from C++ code. OpenGM realizes the Inference Algorithm Interface (IAI), a concept that makes it easy for programmers to use their own algorithms and factor classes with OpenGM.

Changes:

Initial Announcement on mloss.org.


Logo Pyriel 1.5

by tfawcett - October 27, 2010, 09:12:53 CET [ BibTeX BibTeX for corresponding Paper Download ] 10622 views, 2286 downloads, 1 subscription

About: Pyriel is a Python system for learning classification rules from data. Unlike other rule learning systems, it is designed to learn rule lists that maximize the area under the ROC curve (AUC) instead of accuracy. Pyriel is mostly an experimental research tool, but it's robust and fast enough to be used for lightweight industrial data mining.

Changes:

1.5 Changed CF (confidence factor) to do LaPlace smoothing of estimates. New flag "--score-for-class C" causes scores to be computed relative to a given (positive) class. For two-class problems. Fixed bug in example sampling code (--sample n) Fixed bug keeping old-style example formats (terminated by dot) from working. More code restructuring.


Logo pHMM4weka 1.0

by smm52 - October 22, 2010, 03:48:07 CET [ Project Homepage BibTeX Download ] 3116 views, 926 downloads, 1 subscription

About: This Java software implements Profile Hidden Markov Models (PHMMs) for protein classification for the WEKA workbench. Standard PHMMs and newly introduced binary PHMMs are used. In addition the software allows propositionalisation of PHMMs.

Changes:

description changed


Logo SketchSort 0.0.6

by ytabei - October 11, 2010, 18:33:21 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 3273 views, 541 downloads, 1 subscription

About: A Sortware for All Pairs Similarity Search

Changes:

Initial Announcement on mloss.org.


Logo KeplerWeka 20101008

by fracpete - October 9, 2010, 05:27:13 CET [ Project Homepage BibTeX Download ] 8839 views, 3055 downloads, 1 subscription

About: KeplerWeka represents the integration of all the functionality of the WEKA Machine Learning Workbench into the open-source scientific workflow Kepler. Among them are classification, [...]

Changes:
  • Now compatible with Kepler 2.0
  • New version of WEKA included (patched 3.7.2 release), WEKA's new package manager works in conjunction with Kepler
  • Renamed actor Count to ConditionalTee, introduced new Count actor
  • Removed actors OutputLogger, MultiSync, TwinSync

Logo OpenViBE 0.8.0

by k3rl0u4rn - October 1, 2010, 16:15:08 CET [ Project Homepage BibTeX Download ] 10700 views, 2996 downloads, 1 subscription

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About: OpenViBE is an opensource platform that enables to design, test and use Brain-Computer Interfaces (BCI). Broadly speaking, OpenViBE can be used in many real-time Neuroscience applications [...]

Changes:

New release 0.8.0.


Logo Moses Decoder 2010-08-13

by oliver_wilson - September 3, 2010, 13:49:43 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 4231 views, 1396 downloads, 0 comments, 1 subscription

About: Moses is a statistical machine translation system that allows you to automatically train translation models for any language pair. All you need is a collection of translated texts (parallel corpus). An efficient search algorithm finds quickly the highest probability translation among the exponential number of choices.

Changes:

Initial Announcement on mloss.org.


Logo jblas 1.1.1

by mikio - September 1, 2010, 13:53:51 CET [ Project Homepage BibTeX Download ] 11422 views, 2832 downloads, 1 subscription

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About: jblas is a fast linear algebra library for Java. jblas is based on BLAS and LAPACK, the de-facto industry standard for matrix computations, and uses state-of-the-art implementations like ATLAS for all its computational routines, making jBLAS very fast.

Changes:

Changes from 1.0:

  • Added singular value decomposition
  • Fixed bug with returning complex values
  • Many other minor improvements

Logo redsvd 0.1.0

by hillbig - August 30, 2010, 18:13:55 CET [ Project Homepage BibTeX Download ] 3709 views, 786 downloads, 1 subscription

About: redsvd is a library for solving several matrix decomposition (SVD, PCA, eigen value decomposition) redsvd can handle very large matrix efficiently, and optimized for a truncated SVD of sparse matrices. For example, redsvd can compute a truncated SVD with top 20 singular values for a 100K x 100K matrix with 10M nonzero entries in about two second.

Changes:

Initial Announcement on mloss.org.


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