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Logo JMLR SHOGUN 4.0.0

by sonne - February 5, 2015, 09:09:37 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 90308 views, 12589 downloads, 6 subscriptions

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About: The SHOGUN machine learning toolbox's focus is on large scale learning methods with focus on Support Vector Machines (SVM), providing interfaces to python, octave, matlab, r and the command line.

Changes:

This release features the work of our 8 GSoC 2014 students [student; mentors]:

  • OpenCV Integration and Computer Vision Applications [Abhijeet Kislay; Kevin Hughes]
  • Large-Scale Multi-Label Classification [Abinash Panda; Thoralf Klein]
  • Large-scale structured prediction with approximate inference [Jiaolong Xu; Shell Hu]
  • Essential Deep Learning Modules [Khaled Nasr; Sergey Lisitsyn, Theofanis Karaletsos]
  • Fundamental Machine Learning: decision trees, kernel density estimation [Parijat Mazumdar ; Fernando Iglesias]
  • Shogun Missionary & Shogun in Education [Saurabh Mahindre; Heiko Strathmann]
  • Testing and Measuring Variable Interactions With Kernels [Soumyajit De; Dino Sejdinovic, Heiko Strathmann]
  • Variational Learning for Gaussian Processes [Wu Lin; Heiko Strathmann, Emtiyaz Khan]

It also contains several cleanups and bugfixes:

Features

  • New Shogun project description [Heiko Strathmann]
  • ID3 algorithm for decision tree learning [Parijat Mazumdar]
  • New modes for PCA matrix factorizations: SVD & EVD, in-place or reallocating [Parijat Mazumdar]
  • Add Neural Networks with linear, logistic and softmax neurons [Khaled Nasr]
  • Add kernel multiclass strategy examples in multiclass notebook [Saurabh Mahindre]
  • Add decision trees notebook containing examples for ID3 algorithm [Parijat Mazumdar]
  • Add sudoku recognizer ipython notebook [Alejandro Hernandez]
  • Add in-place subsets on features, labels, and custom kernels [Heiko Strathmann]
  • Add Principal Component Analysis notebook [Abhijeet Kislay]
  • Add Multiple Kernel Learning notebook [Saurabh Mahindre]
  • Add Multi-Label classes to enable Multi-Label classification [Thoralf Klein]
  • Add rectified linear neurons, dropout and max-norm regularization to neural networks [Khaled Nasr]
  • Add C4.5 algorithm for multiclass classification using decision trees [Parijat Mazumdar]
  • Add support for arbitrary acyclic graph-structured neural networks [Khaled Nasr]
  • Add CART algorithm for classification and regression using decision trees [Parijat Mazumdar]
  • Add CHAID algorithm for multiclass classification and regression using decision trees [Parijat Mazumdar]
  • Add Convolutional Neural Networks [Khaled Nasr]
  • Add Random Forests algorithm for ensemble learning using CART [Parijat Mazumdar]
  • Add Restricted Botlzmann Machines [Khaled Nasr]
  • Add Stochastic Gradient Boosting algorithm for ensemble learning [Parijat Mazumdar]
  • Add Deep contractive and denoising autoencoders [Khaled Nasr]
  • Add Deep belief networks [Khaled Nasr]

Bugfixes

  • Fix reference counting bugs in CList when reference counting is on [Heiko Strathmann, Thoralf Klein, lambday]
  • Fix memory problem in PCA::apply_to_feature_matrix [Parijat Mazumdar]
  • Fix crash in LeastAngleRegression for the case D greater than N [Parijat Mazumdar]
  • Fix memory violations in bundle method solvers [Thoralf Klein]
  • Fix fail in library_mldatahdf5.cpp example when http://mldata.org is not working properly [Parijat Mazumdar]
  • Fix memory leaks in Vowpal Wabbit, LibSVMFile and KernelPCA [Thoralf Klein]
  • Fix memory and control flow issues discovered by Coverity [Thoralf Klein]
  • Fix R modular interface SWIG typemap (Requires SWIG >= 2.0.5) [Matt Huska]

Cleanup and API Changes

  • PCA now depends on Eigen3 instead of LAPACK [Parijat Mazumdar]
  • Removing redundant and fixing implicit imports [Thoralf Klein]
  • Hide many methods from SWIG, reducing compile memory by 500MiB [Heiko Strathmann, Fernando Iglesias, Thoralf Klein]

Logo WEKA 3.7.12

by mhall - December 17, 2014, 03:04:17 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 43540 views, 6467 downloads, 3 subscriptions

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About: The Weka workbench contains a collection of visualization tools and algorithms for data analysis and predictive modelling, together with graphical user interfaces for easy access to this [...]

Changes:

In core weka:

  • GUIChooser now has a plugin exension point that allows implementations of GUIChooser.GUIChooserMenuPlugin to appear as entries in either the Tools or Visualization menus
  • SubsetByExpression filter now has support for regexp matching
  • weka.classifiers.IterativeClassifierOptimizer - a classifier that can efficiently optimize the number of iterations for a base classifier that implements IterativeClassifier
  • Speedup for LogitBoost in the two class case
  • weka.filters.supervised.instance.ClassBalancer - a simple filter to balance the weight of classes
  • New class hierarchy for stopwords algorithms. Includes new methods to read custom stopwords from a file and apply multiple stopwords algorithms
  • Ability to turn off capabilities checking in Weka algorithms. Improves runtime for ensemble methods that create a lot of simple base classifiers
  • Memory savings in weka.core.Attribute
  • Improvements in runtime for SimpleKMeans and EM
  • weka.estimators.UnivariateMixtureEstimator - new mixture estimator

In packages:

  • New discriminantAnalysis package. Provides an implementation of Fisher's linear discriminant analysis
  • Quartile estimators, correlation matrix heat map and k-means++ clustering in distributed Weka
  • Support for default settings for GridSearch via a properties file
  • Improvements in scripting with addition of the offical Groovy console (kfGroovy package) from the Groovy project and TigerJython (new tigerjython package) as the Jython console via the GUIChooser
  • Support for the latest version of MLR in the RPlugin package
  • EAR4 package contributed by Vahid Jalali
  • StudentFilters package contributed by Chris Gearhart
  • graphgram package contributed by Johannes Schneider

Logo JMLR MOA Massive Online Analysis Nov-13

by abifet - April 4, 2014, 03:50:20 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 12552 views, 5006 downloads, 1 subscription

About: Massive Online Analysis (MOA) is a real time analytic tool for data streams. It is a software environment for implementing algorithms and running experiments for online learning from evolving data streams. MOA includes a collection of offline and online methods as well as tools for evaluation. In particular, it implements boosting, bagging, and Hoeffding Trees, all with and without Naive Bayes classifiers at the leaves. MOA supports bi-directional interaction with WEKA, the Waikato Environment for Knowledge Analysis, and it is released under the GNU GPL license.

Changes:

New version November 2013


Logo Libra 1.0.1

by lowd - March 30, 2014, 09:42:00 CET [ Project Homepage BibTeX Download ] 10914 views, 2407 downloads, 1 subscription

About: The Libra Toolkit is a collection of algorithms for learning and inference with discrete probabilistic models, including Bayesian networks, Markov networks, dependency networks, sum-product networks, arithmetic circuits, and mixtures of trees.

Changes:

Version 1.0.1 (3/30/2014):

  • Several new algorithms -- acmn, learning ACs using MNs; idspn, SPN structure learning; mtlearn, learning mixtures of trees
  • Several new support programs -- spquery, for exact inference in SPNs; spn2ac, for converting SPNs to ACs
  • Renamed aclearnstruct to acbn
  • Replaced aclearnstruct -noac with separate bnlearn program
  • ...and many more small changes and fixes, throughout!

Logo JMLR CARP 3.3

by volmeln - November 7, 2013, 15:48:06 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 15640 views, 5045 downloads, 1 subscription

About: CARP: The Clustering Algorithms’ Referee Package

Changes:

Generalized overlap error and some bugs have been fixed


Logo JMLR Jstacs 2.1

by keili - June 3, 2013, 07:32:55 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 15526 views, 3717 downloads, 2 subscriptions

About: A Java framework for statistical analysis and classification of biological sequences

Changes:

New classes:

  • MultipleIterationsCondition: Requires another TerminationCondition to fail a contiguous, specified number of times
  • ClassifierFactory: Allows for creating standard classifiers
  • SeqLogoPlotter: Plot PNG sequence logos from within Jstacs
  • MultivariateGaussianEmission: Multivariate Gaussian emission density for a Hidden Markov Model
  • MEManager: Maximum entropy model

New features and improvements:

  • Alignment: Added free shift alignment
  • PerformanceMeasure and sub-classes: Extension to weighted test data
  • AbstractClassifier, ClassifierAssessment and sub-classes: Adaption to weighted PerformanceMeasures
  • DNAAlphabet: Parser speed-up
  • PFMComparator: Extension to PFM from other sources/databases
  • ToolBox: New convenience methods for computing several statistics (e.g., median, correlation)
  • SignificantMotifOccurrencesFinder: New methods for computing PWMs and statistics from predictions
  • SequenceScore and sub-classes: New method toString(NumberFormat)
  • DataSet: Adaption to weighted data, e.g., partitioning
  • REnvironment: Changed several methods from String to CharSequence

Restructuring:

  • changed MultiDimensionalSequenceWrapperDiffSM to MultiDimensionalSequenceWrapperDiffSS

Several minor new features, bug fixes, and code cleanups


Logo JMLR libDAI 0.3.1

by jorism - September 17, 2012, 14:17:03 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 37121 views, 6909 downloads, 2 subscriptions

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About: libDAI provides free & open source implementations of various (approximate) inference methods for graphical models with discrete variables, including Bayesian networks and Markov Random Fields.

Changes:

Release 0.3.1 fixes various bugs. The issues on 64-bit Windows platforms have been fixed and libDAI now offers full 64-bit support on all supported platforms (Linux, Mac OSX, Windows).


Logo JMLR LPmade 1.2.2

by rlichten - April 2, 2012, 17:11:59 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 18706 views, 7230 downloads, 1 subscription

About: Link Prediction Made Easy

Changes:

v1.2.2

  • Fixed MAJOR issue related to github migration several months ago. The original github commit neglected to import empty folders. This caused parts of the project compilation procedure to fail. Any users of LPmade who downloaded the most recent version from github over the last several months would have encountered this build error and should download the most recent version. This change updates the network library makefile to create the empty folders and gets around the issue. Very sorry to anybody that this may have inconvenienced, but thanks for hanging in there if you diagnosed and solved it yourself.

  • Fixed issue with auroc on 32-bit architectures that caused integer wraparounds that produced incorrect results.


Logo SGD 2.0

by leonbottou - October 11, 2011, 20:59:41 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 10866 views, 1716 downloads, 5 subscriptions

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About: The SGD-2.0 package contains implementations of the SGD and ASGD algorithms for linear SVMs and linear CRFs.

Changes:

Version 2.0 features ASGD.


Logo Moses Decoder 2010-08-13

by oliver_wilson - September 3, 2010, 13:49:43 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 4705 views, 1562 downloads, 0 comments, 1 subscription

About: Moses is a statistical machine translation system that allows you to automatically train translation models for any language pair. All you need is a collection of translated texts (parallel corpus). An efficient search algorithm finds quickly the highest probability translation among the exponential number of choices.

Changes:

Initial Announcement on mloss.org.


Logo jblas 1.1.1

by mikio - September 1, 2010, 13:53:51 CET [ Project Homepage BibTeX Download ] 12513 views, 3120 downloads, 1 subscription

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About: jblas is a fast linear algebra library for Java. jblas is based on BLAS and LAPACK, the de-facto industry standard for matrix computations, and uses state-of-the-art implementations like ATLAS for all its computational routines, making jBLAS very fast.

Changes:

Changes from 1.0:

  • Added singular value decomposition
  • Fixed bug with returning complex values
  • Many other minor improvements

Logo asp 0.3

by sonne - May 7, 2010, 10:25:39 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 7988 views, 1590 downloads, 1 subscription

About: Accurate splice site predictor for a variety of genomes.

Changes:

Asp now supports three formats:

-g fname for gff format

-s fname for spf format

-b dir for a binary format compatible with mGene.

And a new switch

-t which switches on a sigmoid-based transformation of the svm scores to get scores between 0 and 1.


Logo LIBSVM 2.9

by cjlin - February 27, 2010, 01:09:23 CET [ Project Homepage BibTeX Download ] 11010 views, 2249 downloads, 1 subscription

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About: LIBSVM is an integrated software for support vector classification, (C-SVC, nu-SVC ), regression (epsilon-SVR, nu-SVR) and distribution estimation (one-class SVM). It supports multi-class [...]

Changes:

Initial Announcement on mloss.org.


About: A Java library to create, process and manage mixtures of exponential families.

Changes:

Initial Announcement on mloss.org.


Logo JMLR RL Glue and Codecs -- Glue 3.x and Codecs

by btanner - October 12, 2009, 07:50:03 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 16893 views, 1902 downloads, 1 subscription

About: RL-Glue allows agents, environments, and experiments written in Java, C/C++, Matlab, Python, and Lisp to inter operate, accelerating research by promoting software re-use in the community.

Changes:

RL-Glue paper has been published in JMLR.


Logo LibSGDQN 1.1

by antojne - July 2, 2009, 15:02:44 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 7009 views, 1400 downloads, 1 subscription

About: LibSGDQN proposes an implementation of SGD-QN, a carefully designed quasi-Newton stochastic gradient descent solver for linear SVMs.

Changes:

small bug fix (thx nicolas ;)


Logo OLaRankGreedy 1.0

by antojne - June 24, 2009, 17:07:57 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 4432 views, 965 downloads, 1 subscription

About: OLaRankGreedy is an online solver of the dual formulation of support vector machines for sequence labeling using greedy inference.

Changes:

Initial Announcement on mloss.org.


Logo OLaRankExact 1.0

by antojne - June 24, 2009, 17:03:48 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 4124 views, 997 downloads, 1 subscription

About: OLaRank is an online solver of the dual formulation of support vector machines for sequence labeling using viterbi decoding.

Changes:

Initial Announcement on mloss.org.


Logo C MixSim 0.5

by volmeln - June 10, 2009, 19:37:42 CET [ Project Homepage BibTeX Download ] 5157 views, 1224 downloads, 1 subscription

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About: C-MixSim is an open source package written in C for simulating finite mixture models with Gaussian components. With a vast number of clustering algorithms, evaluating performance is important. C-MixSim provides an easy and convenient way of generating datasets from Gaussian mixture models with different levels of clustering complexity. C-MixSim is released under the GNU GPL license.

Changes:

Initial Announcement on mloss.org.


Logo arts 0.2

by sonne - May 25, 2009, 09:56:31 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 4734 views, 991 downloads, 1 subscription

About: ARTS is an accurate predictor for Transcription Start Sites (TSS).

Changes:

Initial Announcement on mloss.org.


Showing Items 1-20 of 31 on page 1 of 2: 1 2 Next