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Logo svmPRAT 1.0

by rangwala - December 28, 2009, 00:27:03 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 4343 views, 1101 downloads, 1 subscription

About: BACKGROUND:Over the last decade several prediction methods have been developed for determining the structural and functional properties of individual protein residues using sequence and sequence-derived information. Most of these methods are based on support vector machines as they provide accurate and generalizable prediction models. RESULTS:We present a general purpose protein residue annotation toolkit (svmPRAT) to allow biologists to formulate residue-wise prediction problems. svmPRAT formulates the annotation problem as a classification or regression problem using support vector machines. One of the key features of svmPRAT is its ease of use in incorporating any user-provided information in the form of feature matrices. For every residue svmPRAT captures local information around the reside to create fixed length feature vectors. svmPRAT implements accurate and fast kernel functions, and also introduces a flexible window-based encoding scheme that accurately captures signals and pattern for training eective predictive models. CONCLUSIONS:In this work we evaluate svmPRAT on several classification and regression problems including disorder prediction, residue-wise contact order estimation, DNA-binding site prediction, and local structure alphabet prediction. svmPRAT has also been used for the development of state-of-the-art transmembrane helix prediction method called TOPTMH, and secondary structure prediction method called YASSPP. This toolkit developed provides practitioners an efficient and easy-to-use tool for a wide variety of annotation problems. Availability: http://www.cs.gmu.edu/~mlbio/svmprat/

Changes:

Initial Announcement on mloss.org.


Logo Pynopticon 0.1

by Wiecki - February 1, 2009, 18:55:10 CET [ Project Homepage BibTeX Download ] 3818 views, 1096 downloads, 1 subscription

About: Pynopticon is a toolbox that allows you to create and train your own object recognition classifiers. It makes rapid prototyping of object recognition work flows a snap. Simply create a dataset of [...]

Changes:

Initial Announcement on mloss.org.


About: Stochastic neighbor embedding originally aims at the reconstruction of given distance relations in a low-dimensional Euclidean space. This can be regarded as general approach to multi-dimensional scaling, but the reconstruction is based on the definition of input (and output) neighborhood probability alone. The present implementation also allows for handling dissimilarity or score-induced neighborhood topologies and makes use of quasi 2nd order gradient-based (l-)BFGS optimization.

Changes:
  • gradient in xsne_fun.m fixed! (constant factor m was missing)

  • symmetry option re-introduced allowing for enabling symmetric and asymmetric versions of SNE and t-SNE


Logo r-cran-bigrf 0.1-11

by r-cran-robot - May 16, 2014, 00:00:00 CET [ Project Homepage BibTeX Download ] 4582 views, 1092 downloads, 0 subscriptions

About: Big Random Forests

Changes:

Fetched by r-cran-robot on 2015-07-01 00:00:04.374159


About: This page contains the implementation used in the paper „Experimental Design for Efficient Identification of Gene Regulatory Networks using Sparse Bayesian Models“ by Florian Steinke, Matthias [...]

Changes:

Initial Announcement on mloss.org.


Logo arts 0.2

by sonne - May 25, 2009, 09:56:31 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 5118 views, 1087 downloads, 1 subscription

About: ARTS is an accurate predictor for Transcription Start Sites (TSS).

Changes:

Initial Announcement on mloss.org.


Logo r-cran-C50 0.1.0-24

by r-cran-robot - March 8, 2015, 00:00:00 CET [ Project Homepage BibTeX Download ] 4568 views, 1078 downloads, 0 subscriptions

About: C5.0 Decision Trees and Rule-Based Models

Changes:

Fetched by r-cran-robot on 2015-07-01 00:00:04.758939


Logo Eblearn pre-release

by cpoulet - October 10, 2008, 22:20:23 CET [ Project Homepage BibTeX Download ] 4520 views, 1075 downloads, 0 comments, 1 subscription

About: Eblearn is an object-oriented C++ library that implements various

Changes:

Initial Announcement on mloss.org.


Logo Bilingual Text Classification 0.1

by jorcisai - April 9, 2010, 15:13:08 CET [ BibTeX BibTeX for corresponding Paper Download ] 2993 views, 1067 downloads, 1 subscription

About: This software package implements a series of statistical mixture models for bilingual text classificacion trained by the EM algorihtm.

Changes:

Initial Announcement on mloss.org.


Logo Neural network designer 1.1.1

by bragi - December 28, 2012, 11:38:10 CET [ Project Homepage BibTeX Download ] 4450 views, 1064 downloads, 1 subscription

About: a dbms for resonating neural networks. Create and use different types of machine learning algorithms.

Changes:

AIML compatible (AIML files can be imported); new 'Grid channel' for developing board games; improved topics editor; new demo project: ALice (from AIML); lots of bug-fixes and speed improvements


Showing Items 301-310 of 590 on page 31 of 59: First Previous 26 27 28 29 30 31 32 33 34 35 36 Next Last