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Logo TurboParser 2.0

by afm - October 11, 2012, 02:59:04 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 5099 views, 1159 downloads, 1 subscription

About: TurboParser is a free multilingual dependency parser based on linear programming developed by André Martins. It is based on joint work with Noah Smith, Mário Figueiredo, Eric Xing, Pedro Aguiar.


This version introduces a number of new features:

  • The parser does not depend anymore on CPLEX (or any other non-free LP solver). Instead, the decoder is now based on AD3, our free library for approximate MAP inference.

  • The parser now outputs dependency labels along with the backbone structure.

  • As a bonus, we now provide a trainable part-of-speech tagger, called TurboTagger, which can be used in standalone mode, or to provide part-of-speech tags as input for the parser. TurboTagger has state-of-the-art accuracy for English (97.3% on section 23 of the Penn Treebank) and is fast (~40,000 tokens per second).

  • The parser is much faster than in previous versions. You may choose among a basic arc-factored parser (~4,300 tokens per second), a standard second-order model with consecutive sibling and grandparent features (the default; ~1,200 tokens per second), and a full model with head bigram and arbitrary sibling features (~900 tokens per second).

Note: The runtimes above are approximate, and based on experiments with a desktop machine with a Intel Core i7 CPU 3.4 GHz and 8GB RAM. To run this software, you need a standard C++ compiler. This software has the following external dependencies: AD3, a library for approximate MAP inference; Eigen, a template library for linear algebra; google-glog, a library for logging; gflags, a library for commandline flag processing. All these libraries are free software and are provided as tarballs in this package.

This software has been tested on Linux, but it should run in other platforms with minor adaptations.

Logo r-cran-bigrf 0.1-11

by r-cran-robot - May 16, 2014, 00:00:00 CET [ Project Homepage BibTeX Download ] 4811 views, 1155 downloads, 0 subscriptions

About: Big Random Forests


Fetched by r-cran-robot on 2015-08-01 00:00:04.412633

Logo HDDM 0.5

by Wiecki - April 24, 2013, 02:53:07 CET [ Project Homepage BibTeX Download ] 4488 views, 1155 downloads, 1 subscription

About: HDDM is a python toolbox for hierarchical Bayesian parameter estimation of the Drift Diffusion Model (via PyMC). Drift Diffusion Models are used widely in psychology and cognitive neuroscience to study decision making.

  • New and improved HDDM model with the following changes:
    • Priors: by default model will use informative priors (see If you want uninformative priors, set informative=False.
    • Sampling: This model uses slice sampling which leads to faster convergence while being slower to generate an individual sample. In our experiments, burnin of 20 is often good enough.
    • Inter-trial variablity parameters are only estimated at the group level, not for individual subjects.
    • The old model has been renamed to HDDMTransformed.
    • HDDMRegression and HDDMStimCoding are also using this model.
  • HDDMRegression takes patsy model specification strings. See and
  • Improved online documentation at
  • A new HDDM demo at
  • Ratcliff's quantile optimization method for single subjects and groups using the .optimize() method
  • Maximum likelihood optimization.
  • Many bugfixes and better test coverage.
  • command line utility is depracated.

Logo r-cran-C50 0.1.0-24

by r-cran-robot - March 8, 2015, 00:00:00 CET [ Project Homepage BibTeX Download ] 4806 views, 1147 downloads, 0 subscriptions

About: C5.0 Decision Trees and Rule-Based Models


Fetched by r-cran-robot on 2015-08-01 00:00:04.757630

About: Stochastic neighbor embedding originally aims at the reconstruction of given distance relations in a low-dimensional Euclidean space. This can be regarded as general approach to multi-dimensional scaling, but the reconstruction is based on the definition of input (and output) neighborhood probability alone. The present implementation also allows for handling dissimilarity or score-induced neighborhood topologies and makes use of quasi 2nd order gradient-based (l-)BFGS optimization.

  • gradient in xsne_fun.m fixed! (constant factor m was missing)

  • symmetry option re-introduced allowing for enabling symmetric and asymmetric versions of SNE and t-SNE

Logo cbMDS Correlation Based Multi Dimensional Scaling 1.2

by emstrick - July 27, 2013, 14:35:36 CET [ BibTeX BibTeX for corresponding Paper Download ] 4741 views, 1145 downloads, 1 subscription

About: The aim is to embed a given data relationship matrix into a low-dimensional Euclidean space such that the point distances / distance ranks correlate best with the original input relationships. Input relationships may be given as (sparse) (asymmetric) distance, dissimilarity, or (negative!) score matrices. Input-output relations are modeled as low-conditioned. (Weighted) Pearson and soft Spearman rank correlation, and unweighted soft Kendall correlation are supported correlation measures for input/output object neighborhood relationships.

  • Initial release (Ver 1.0): Weighted Pearson and correlation and soft Spearman rank correlation, Tue Dec 4 16:14:51 CET 2012

  • Ver 1.1 Added soft Kendall correlation, Fri Mar 8 08:41:09 CET 2013

  • Ver 1.2 Added reconstruction of sparse relationship matrices, Fri Jul 26 16:58:37 CEST 2013

Logo Kernel Multiple Logistic Regression 1.0

by mseeger - November 10, 2007, 22:16:50 CET [ Project Homepage BibTeX Download ] 5020 views, 1143 downloads, 0 subscriptions

About: Efficient implementation of penalized multiple logistic regression (aka multi-class) with Mercer kernels, aka MAP approximation to the multi-class Gaussian process model. This includes [...]


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Logo svmPRAT 1.0

by rangwala - December 28, 2009, 00:27:03 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 4393 views, 1133 downloads, 1 subscription

About: BACKGROUND:Over the last decade several prediction methods have been developed for determining the structural and functional properties of individual protein residues using sequence and sequence-derived information. Most of these methods are based on support vector machines as they provide accurate and generalizable prediction models. RESULTS:We present a general purpose protein residue annotation toolkit (svmPRAT) to allow biologists to formulate residue-wise prediction problems. svmPRAT formulates the annotation problem as a classification or regression problem using support vector machines. One of the key features of svmPRAT is its ease of use in incorporating any user-provided information in the form of feature matrices. For every residue svmPRAT captures local information around the reside to create fixed length feature vectors. svmPRAT implements accurate and fast kernel functions, and also introduces a flexible window-based encoding scheme that accurately captures signals and pattern for training eective predictive models. CONCLUSIONS:In this work we evaluate svmPRAT on several classification and regression problems including disorder prediction, residue-wise contact order estimation, DNA-binding site prediction, and local structure alphabet prediction. svmPRAT has also been used for the development of state-of-the-art transmembrane helix prediction method called TOPTMH, and secondary structure prediction method called YASSPP. This toolkit developed provides practitioners an efficient and easy-to-use tool for a wide variety of annotation problems. Availability:


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About: A Java library to create, process and manage mixtures of exponential families.


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Logo chestnut Machine Learning Suite 0.1.1

by damianeads - October 7, 2008, 13:04:19 CET [ Project Homepage BibTeX Download ] 4891 views, 1131 downloads, 1 subscription

About: The Chestnut Machine Learning Library is a suite of machine learning algorithms written in Python with some code written in C for efficiency. Most algorithms are called with a simple, functional API [...]


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