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Logo svmPRAT 1.0

by rangwala - December 28, 2009, 00:27:03 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 3863 views, 958 downloads, 1 subscription

About: BACKGROUND:Over the last decade several prediction methods have been developed for determining the structural and functional properties of individual protein residues using sequence and sequence-derived information. Most of these methods are based on support vector machines as they provide accurate and generalizable prediction models. RESULTS:We present a general purpose protein residue annotation toolkit (svmPRAT) to allow biologists to formulate residue-wise prediction problems. svmPRAT formulates the annotation problem as a classification or regression problem using support vector machines. One of the key features of svmPRAT is its ease of use in incorporating any user-provided information in the form of feature matrices. For every residue svmPRAT captures local information around the reside to create fixed length feature vectors. svmPRAT implements accurate and fast kernel functions, and also introduces a flexible window-based encoding scheme that accurately captures signals and pattern for training eective predictive models. CONCLUSIONS:In this work we evaluate svmPRAT on several classification and regression problems including disorder prediction, residue-wise contact order estimation, DNA-binding site prediction, and local structure alphabet prediction. svmPRAT has also been used for the development of state-of-the-art transmembrane helix prediction method called TOPTMH, and secondary structure prediction method called YASSPP. This toolkit developed provides practitioners an efficient and easy-to-use tool for a wide variety of annotation problems. Availability: http://www.cs.gmu.edu/~mlbio/svmprat/

Changes:

Initial Announcement on mloss.org.


Logo OLaRankExact 1.0

by antojne - June 24, 2009, 17:03:48 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 3988 views, 957 downloads, 1 subscription

About: OLaRank is an online solver of the dual formulation of support vector machines for sequence labeling using viterbi decoding.

Changes:

Initial Announcement on mloss.org.


Logo arts 0.2

by sonne - May 25, 2009, 09:56:31 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 4565 views, 955 downloads, 1 subscription

About: ARTS is an accurate predictor for Transcription Start Sites (TSS).

Changes:

Initial Announcement on mloss.org.


Logo rdetools 0.1

by mikio - December 4, 2008, 22:56:37 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 4058 views, 955 downloads, 1 subscription

About: This software contains several matlab scripts for computing the RDE (relevant dimensionality estimate). The RDE measures the number of leading PCA components in feature space which contain the [...]

Changes:

Initial Announcement on mloss.org.


Logo Boosted Decision Trees and Lists 1.0.4

by melamed - July 25, 2014, 23:08:32 CET [ BibTeX Download ] 3191 views, 954 downloads, 3 subscriptions

About: Boosting algorithms for classification and regression, with many variations. Features include: Scalable and robust; Easily customizable loss functions; One-shot training for an entire regularization path; Continuous checkpointing; much more

Changes:
  • added ElasticNets as a regularization option
  • fixed some segfaults, memory leaks, and out-of-range errors, which were creeping in in some corner cases
  • added a couple of I/O optimizations

Logo Bilingual Text Classification 0.1

by jorcisai - April 9, 2010, 15:13:08 CET [ BibTeX BibTeX for corresponding Paper Download ] 2610 views, 948 downloads, 1 subscription

About: This software package implements a series of statistical mixture models for bilingual text classificacion trained by the EM algorihtm.

Changes:

Initial Announcement on mloss.org.


Logo COIN OR 1.2

by sonne - July 13, 2009, 10:51:10 CET [ Project Homepage BibTeX Download ] 3125 views, 944 downloads, 1 subscription

About: The Computational Infrastructure for Operations Research (COIN-OR) project is an initiative to spur the development of open-source software for the operations research community.

Changes:

Initial Announcement on mloss.org.


Logo OLaRankGreedy 1.0

by antojne - June 24, 2009, 17:07:57 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 4287 views, 936 downloads, 1 subscription

About: OLaRankGreedy is an online solver of the dual formulation of support vector machines for sequence labeling using greedy inference.

Changes:

Initial Announcement on mloss.org.


Logo Tuwo 1.0

by nowozin - May 19, 2009, 09:19:41 CET [ Project Homepage BibTeX Download ] 3868 views, 936 downloads, 1 subscription

About: C++ Library for High-level Computer Vision Tasks

Changes:

Initial Announcement on mloss.org.


Logo Divvy 1.1.1

by jlewis - November 14, 2012, 20:21:29 CET [ Project Homepage BibTeX Download ] 1843 views, 932 downloads, 1 subscription

About: Divvy is a Mac OS X application for performing dimensionality reduction, clustering, and visualization.

Changes:

Initial Announcement on mloss.org.


Showing Items 291-300 of 552 on page 30 of 56: First Previous 25 26 27 28 29 30 31 32 33 34 35 Next Last