Projects authored by gunnar raetsch.


Logo JMLR SHOGUN 3.2.0

by sonne - February 17, 2014, 20:31:36 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 83382 views, 11564 downloads, 5 subscriptions

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About: The SHOGUN machine learning toolbox's focus is on large scale learning methods with focus on Support Vector Machines (SVM), providing interfaces to python, octave, matlab, r and the command line.

Changes:

This is mostly a bugfix release:

Features

  • Fully support python3 now
  • Add mini-batch k-means [Parijat Mazumdar]
  • Add k-means++ [Parijat Mazumdar]
  • Add sub-sequence string kernel [lambday]

Bugfixes

  • Compile fixes for upcoming swig3.0
  • Speedup for gaussian process' apply()
  • Improve unit / integration test checks
  • libbmrm uninitialized memory reads
  • libocas uninitialized memory reads
  • Octave 3.8 compile fixes [Orion Poplawski]
  • Fix java modular compile error [Bjoern Esser]

Logo asp 0.3

by sonne - May 7, 2010, 10:25:39 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 7360 views, 1459 downloads, 1 subscription

About: Accurate splice site predictor for a variety of genomes.

Changes:

Asp now supports three formats:

-g fname for gff format

-s fname for spf format

-b dir for a binary format compatible with mGene.

And a new switch

-t which switches on a sigmoid-based transformation of the svm scores to get scores between 0 and 1.


Logo Hidden Markov Support Vector Machines 0.2

by pramod - April 16, 2010, 17:27:41 CET [ BibTeX Download ] 4671 views, 1192 downloads, 1 subscription

About: This software is an implementation of Hidden Markov Support Vector Machines (HMSVMs).

Changes:

Initial Announcement on mloss.org.


Logo Easysvm 0.3

by gxr - June 25, 2009, 18:33:04 CET [ Project Homepage BibTeX Download ] 7981 views, 1515 downloads, 1 subscription

About: The Easysvm package provides a set of tools based on the Shogun toolbox allowing to train and test SVMs in a simple way.

Changes:

Fixes for shogun 0.7.3.


Logo mSplicer 0.3

by sonne - May 18, 2008, 13:07:40 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 5546 views, 1147 downloads, 3 subscriptions

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About: For modern biology, precise genome annotations are of prime importance as they allow the accurate definition of genic regions. We employ state of the art machine learning methods to assay and [...]

Changes:

Initial Announcement on mloss.org.


About: PALMA computes the optimal spliced alignment of a mRNA sequence to a genomic sequence. The main python script takes two FASTA files containing the target (e.g. a DNA sequence, part of the genome) [...]

Changes:

Initial Announcement on mloss.org.