All entries.
Showing Items 391-400 of 537 on page 40 of 54: First Previous 35 36 37 38 39 40 41 42 43 44 45 Next Last

Logo svmPRAT 1.0

by rangwala - December 28, 2009, 00:27:03 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 3600 views, 891 downloads, 1 subscription

About: BACKGROUND:Over the last decade several prediction methods have been developed for determining the structural and functional properties of individual protein residues using sequence and sequence-derived information. Most of these methods are based on support vector machines as they provide accurate and generalizable prediction models. RESULTS:We present a general purpose protein residue annotation toolkit (svmPRAT) to allow biologists to formulate residue-wise prediction problems. svmPRAT formulates the annotation problem as a classification or regression problem using support vector machines. One of the key features of svmPRAT is its ease of use in incorporating any user-provided information in the form of feature matrices. For every residue svmPRAT captures local information around the reside to create fixed length feature vectors. svmPRAT implements accurate and fast kernel functions, and also introduces a flexible window-based encoding scheme that accurately captures signals and pattern for training eective predictive models. CONCLUSIONS:In this work we evaluate svmPRAT on several classification and regression problems including disorder prediction, residue-wise contact order estimation, DNA-binding site prediction, and local structure alphabet prediction. svmPRAT has also been used for the development of state-of-the-art transmembrane helix prediction method called TOPTMH, and secondary structure prediction method called YASSPP. This toolkit developed provides practitioners an efficient and easy-to-use tool for a wide variety of annotation problems. Availability: http://www.cs.gmu.edu/~mlbio/svmprat/

Changes:

Initial Announcement on mloss.org.


About: Matlab code for semi-supervised regression and dimensionality reduction using Hessian energy.

Changes:

Initial Announcement on mloss.org.


Logo Java Optimized Processor for Embedded Machine Learning 1

by rasped - December 15, 2009, 12:51:26 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 3932 views, 776 downloads, 1 subscription

Rating Whole StarWhole StarWhole Star1/2 StarEmpty Star
(based on 1 vote)

About: JOP is a Java virtual machine implemented in hardware. It is a hard real-time open source multicore processor capable of worst case execution time analysis of Java code.

Changes:

Initial Announcement on mloss.org.


Logo r-cran-ROCR 1.0-4

by r-cran-robot - December 8, 2009, 00:00:00 CET [ Project Homepage BibTeX Download ] 4614 views, 957 downloads, 1 subscription

About: Visualizing the performance of scoring classifiers.

Changes:

Fetched by r-cran-robot on 2013-04-01 00:00:08.344833


Logo SCD 2.1

by ambujtewari - December 3, 2009, 22:21:45 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 6071 views, 1142 downloads, 1 subscription

About: A (randomized) coordinate descent procedure to minimize L1 regularized loss for classification and regression purposes.

Changes:

Fixed some I/O bugs. Lines that ended with whitespace were not read correctly in the previous version.


About: A Java library to create, process and manage mixtures of exponential families.

Changes:

Initial Announcement on mloss.org.


Logo r-cran-RPMM 1.06

by r-cran-robot - November 16, 2009, 00:00:00 CET [ Project Homepage BibTeX Download ] 851 views, 162 downloads, 0 subscriptions

About: Recursively Partitioned Mixture Model

Changes:

Initial Announcement on mloss.org by r-cran-robot


Logo kernlab 0.9-9

by alexis - November 2, 2009, 16:03:50 CET [ Project Homepage BibTeX Download ] 9666 views, 1974 downloads, 0 subscriptions

Rating Whole StarWhole StarWhole StarWhole StarEmpty Star
(based on 1 vote)

About: kernlab provides kernel-based Machine Learning methods for classification, regression, clustering, novelty detection, quantile regression and dimensionality reduction. Among other methods kernlab [...]

Changes:

minor fixes in kcca and ksvm functions


Logo seqan 1.2

by sonne - November 2, 2009, 14:54:08 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 5885 views, 1130 downloads, 1 subscription

About: SeqAn is an open source C++ library of efficient algorithms and data structures for the analysis of sequences with the focus on biological data.

Changes:
  • 5 more applications, i.e. DFI, MicroRazerS, PairAlign, SeqCons, TreeRecon
  • stable release of RazerS supporting paired-end read mapping and configurable sensitivity
  • new alignment algorithms, e.g. banded, configurable alignments (overlap, semi-global, ...)
  • realignment algorithm
  • NGS data structures and formats, e.g. SAM, Amos, ...
  • new alphabets, e.g. Dna with base call qualities, profile characters
  • auxiliary data structures and algorithms, e.g. double ended queue, command line parser
  • positional scores
  • CMake support

Logo JMLR Shark 2.3.0

by igel - October 24, 2009, 22:12:48 CET [ Project Homepage BibTeX Download ] 25411 views, 5134 downloads, 1 subscription

Rating Whole StarWhole StarWhole StarWhole StarEmpty Star
(based on 3 votes)

About: SHARK is a modular C++ library for the design and optimization of adaptive systems. It provides various machine learning and computational intelligence techniques.

Changes:
  • new build system
  • minor bug fixes

Showing Items 391-400 of 537 on page 40 of 54: First Previous 35 36 37 38 39 40 41 42 43 44 45 Next Last